miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5553 3' -56.4 NC_001806.1 + 1776 0.67 0.856064
Target:  5'- gGGCACcgGCGUgucCGGGccgaagcgcGUGCGCAcGCg -3'
miRNA:   3'- -CCGUGuaCGCGac-GCUC---------CACGUGU-CG- -5'
5553 3' -56.4 NC_001806.1 + 1840 0.71 0.596241
Target:  5'- aGGCGCAgcggcgGCGCgucgggguacagGCGcGcGUGCGCGGCc -3'
miRNA:   3'- -CCGUGUa-----CGCGa-----------CGCuC-CACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 2415 0.66 0.885532
Target:  5'- cGGCGCA-GCGggccCGAGGcGCGCAGg -3'
miRNA:   3'- -CCGUGUaCGCgac-GCUCCaCGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 2506 0.66 0.863752
Target:  5'- cGCACGcggccUGgGCgGCGGGGgcggGCcCGGCg -3'
miRNA:   3'- cCGUGU-----ACgCGaCGCUCCa---CGuGUCG- -5'
5553 3' -56.4 NC_001806.1 + 2849 0.76 0.37287
Target:  5'- gGGCGCggGCGCgGgGAGGgggGCGCGGg -3'
miRNA:   3'- -CCGUGuaCGCGaCgCUCCa--CGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 3270 0.72 0.567739
Target:  5'- cGCGCAgccacGCGCgcagGCGGGGcGCGuCGGCg -3'
miRNA:   3'- cCGUGUa----CGCGa---CGCUCCaCGU-GUCG- -5'
5553 3' -56.4 NC_001806.1 + 3610 0.71 0.608528
Target:  5'- gGGCACcgcGCGCUcGCccGGUGCgGCGGCg -3'
miRNA:   3'- -CCGUGua-CGCGA-CGcuCCACG-UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 3727 0.74 0.460389
Target:  5'- gGGCGCGUagGCGCgGCGcAGGcUGguCAGCa -3'
miRNA:   3'- -CCGUGUA--CGCGaCGC-UCC-ACguGUCG- -5'
5553 3' -56.4 NC_001806.1 + 3992 0.69 0.720586
Target:  5'- aGGCcUccGCGUc-CGGGGUGUACAGCa -3'
miRNA:   3'- -CCGuGuaCGCGacGCUCCACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 7760 0.69 0.710601
Target:  5'- cGCAUGUGCGCUGCaaacGUGCGCGa- -3'
miRNA:   3'- cCGUGUACGCGACGcuc-CACGUGUcg -5'
5553 3' -56.4 NC_001806.1 + 9195 0.7 0.700548
Target:  5'- gGGuCGCggGUGUgGCGAGG-GCGCGGUc -3'
miRNA:   3'- -CC-GUGuaCGCGaCGCUCCaCGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 13059 0.66 0.885532
Target:  5'- cGGCGacgGUGCGCUGguucuCGGGGaugaagcgGgGCAGCa -3'
miRNA:   3'- -CCGUg--UACGCGAC-----GCUCCa-------CgUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 13148 0.66 0.892346
Target:  5'- aGGCA---G-GCUGaCGGGGggaUGCGCAGCg -3'
miRNA:   3'- -CCGUguaCgCGAC-GCUCC---ACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 19502 0.67 0.831803
Target:  5'- gGGCGCuUGCGCuUGCGc-GUGCcCAGg -3'
miRNA:   3'- -CCGUGuACGCG-ACGCucCACGuGUCg -5'
5553 3' -56.4 NC_001806.1 + 21759 0.71 0.597264
Target:  5'- aGGCGCggGcCGUcggGCGGGGUccgucgaGCGCGGCg -3'
miRNA:   3'- -CCGUGuaC-GCGa--CGCUCCA-------CGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 22544 0.66 0.885532
Target:  5'- uGGCGCGcgagaacgcgGCGCUGaCGGGG-GcCGCGGg -3'
miRNA:   3'- -CCGUGUa---------CGCGAC-GCUCCaC-GUGUCg -5'
5553 3' -56.4 NC_001806.1 + 22587 0.66 0.878491
Target:  5'- cGGCGCcgGCGCagaUGaCGAGGggGuCGCcGCc -3'
miRNA:   3'- -CCGUGuaCGCG---AC-GCUCCa-C-GUGuCG- -5'
5553 3' -56.4 NC_001806.1 + 22957 0.66 0.888285
Target:  5'- cGCACGccgacgcgccccgccUGCGC-GCGuGGcUGCGCgAGCu -3'
miRNA:   3'- cCGUGU---------------ACGCGaCGCuCC-ACGUG-UCG- -5'
5553 3' -56.4 NC_001806.1 + 23001 0.67 0.831803
Target:  5'- cGGUuCGUGCGCgacGCGcuGGUGCuCAuGCg -3'
miRNA:   3'- -CCGuGUACGCGa--CGCu-CCACGuGU-CG- -5'
5553 3' -56.4 NC_001806.1 + 24436 0.67 0.814703
Target:  5'- cGGCaACGUGCGCUacCGc-GUGCGCAcGCg -3'
miRNA:   3'- -CCG-UGUACGCGAc-GCucCACGUGU-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.