miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5553 3' -56.4 NC_001806.1 + 89511 0.66 0.892346
Target:  5'- uGGCGgAUccGgGCgGCGAGcugcUGCGCGGCg -3'
miRNA:   3'- -CCGUgUA--CgCGaCGCUCc---ACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 3270 0.72 0.567739
Target:  5'- cGCGCAgccacGCGCgcagGCGGGGcGCGuCGGCg -3'
miRNA:   3'- cCGUGUa----CGCGa---CGCUCCaCGU-GUCG- -5'
5553 3' -56.4 NC_001806.1 + 112703 0.72 0.567739
Target:  5'- cGCGCGUGCGC-GCGGaucuGGUGUccauCGGCg -3'
miRNA:   3'- cCGUGUACGCGaCGCU----CCACGu---GUCG- -5'
5553 3' -56.4 NC_001806.1 + 30389 0.71 0.588069
Target:  5'- gGGCGCGUGCGa--CGGuGGcGCGCGGCu -3'
miRNA:   3'- -CCGUGUACGCgacGCU-CCaCGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 1840 0.71 0.596241
Target:  5'- aGGCGCAgcggcgGCGCgucgggguacagGCGcGcGUGCGCGGCc -3'
miRNA:   3'- -CCGUGUa-----CGCGa-----------CGCuC-CACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 21759 0.71 0.597264
Target:  5'- aGGCGCggGcCGUcggGCGGGGUccgucgaGCGCGGCg -3'
miRNA:   3'- -CCGUGuaC-GCGa--CGCUCCA-------CGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 3610 0.71 0.608528
Target:  5'- gGGCACcgcGCGCUcGCccGGUGCgGCGGCg -3'
miRNA:   3'- -CCGUGua-CGCGA-CGcuCCACG-UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 118833 0.71 0.618788
Target:  5'- gGGCuCAUGCcaccgGCGAcuguaccccguGGUGCACGGCg -3'
miRNA:   3'- -CCGuGUACGcga--CGCU-----------CCACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 88680 0.71 0.63933
Target:  5'- cGGC-CAUGCGCUcgcagagaucucGUG-GG-GCGCGGCa -3'
miRNA:   3'- -CCGuGUACGCGA------------CGCuCCaCGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 35560 0.72 0.557639
Target:  5'- cGGCGCGcccgGCGCcGCGccgaacgacGUGCGCAGCg -3'
miRNA:   3'- -CCGUGUa---CGCGaCGCuc-------CACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 148161 0.72 0.557639
Target:  5'- gGGCGCGgcgGCGCcucUGCGuGGggggGCGCGGg -3'
miRNA:   3'- -CCGUGUa--CGCG---ACGCuCCa---CGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 151156 0.72 0.547591
Target:  5'- aGGCGCAgGCGC-GCcAGGUGCuccGCGGUg -3'
miRNA:   3'- -CCGUGUaCGCGaCGcUCCACG---UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 37304 0.78 0.264296
Target:  5'- gGGcCGCAgGCGCgugGCGAGGUuauccaGCACAGCc -3'
miRNA:   3'- -CC-GUGUaCGCGa--CGCUCCA------CGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 145030 0.76 0.340402
Target:  5'- cGGCGCAUGCGCUGUGGuuuuuuuuuccucGGUGUuCuGCc -3'
miRNA:   3'- -CCGUGUACGCGACGCU-------------CCACGuGuCG- -5'
5553 3' -56.4 NC_001806.1 + 95290 0.76 0.348909
Target:  5'- cGCGCAUGgGg-GCGGGGgGCGCGGCg -3'
miRNA:   3'- cCGUGUACgCgaCGCUCCaCGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 2849 0.76 0.37287
Target:  5'- gGGCGCggGCGCgGgGAGGgggGCGCGGg -3'
miRNA:   3'- -CCGUGuaCGCGaCgCUCCa--CGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 109691 0.75 0.397925
Target:  5'- gGGCugGUuCGCaGCGAGGUGCAguacuCGGCc -3'
miRNA:   3'- -CCGugUAcGCGaCGCUCCACGU-----GUCG- -5'
5553 3' -56.4 NC_001806.1 + 59182 0.74 0.450225
Target:  5'- gGGCGUAUGcCGCUGCGAGGgugggGUuuugaugGCAGCc -3'
miRNA:   3'- -CCGUGUAC-GCGACGCUCCa----CG-------UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 3727 0.74 0.460389
Target:  5'- gGGCGCGUagGCGCgGCGcAGGcUGguCAGCa -3'
miRNA:   3'- -CCGUGUA--CGCGaCGC-UCC-ACguGUCG- -5'
5553 3' -56.4 NC_001806.1 + 147640 0.74 0.469734
Target:  5'- gGGCACAcgGCGCgcguccGCGGGGcGgGCGGCc -3'
miRNA:   3'- -CCGUGUa-CGCGa-----CGCUCCaCgUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.