miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5553 3' -56.4 NC_001806.1 + 90666 0.67 0.848172
Target:  5'- aGGUAaccauagGCGggGCgGAGGUGCACcGCa -3'
miRNA:   3'- -CCGUgua----CGCgaCG-CUCCACGUGuCG- -5'
5553 3' -56.4 NC_001806.1 + 83635 0.67 0.84657
Target:  5'- cGGCACuuuuuucuccacUGCuGCUuccguaccgacgGCGGGGUGCccggGCGGCa -3'
miRNA:   3'- -CCGUGu-----------ACG-CGA------------CGCUCCACG----UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 99722 0.67 0.840083
Target:  5'- cGUAgGggGCGCUGUGuGGUGgGgGGCg -3'
miRNA:   3'- cCGUgUa-CGCGACGCuCCACgUgUCG- -5'
5553 3' -56.4 NC_001806.1 + 74628 0.67 0.831803
Target:  5'- cGCGCAUggccgaggaaGCGCUGCGGcagGCGCGGg -3'
miRNA:   3'- cCGUGUA----------CGCGACGCUccaCGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 132639 0.67 0.831803
Target:  5'- cGGCACGggaccugGUGC-GCGGGGc-CGCGGCc -3'
miRNA:   3'- -CCGUGUa------CGCGaCGCUCCacGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 23001 0.67 0.831803
Target:  5'- cGGUuCGUGCGCgacGCGcuGGUGCuCAuGCg -3'
miRNA:   3'- -CCGuGUACGCGa--CGCu-CCACGuGU-CG- -5'
5553 3' -56.4 NC_001806.1 + 147810 0.67 0.831803
Target:  5'- uGGCAUggGCGCcGCGGGGgGC-CuGUg -3'
miRNA:   3'- -CCGUGuaCGCGaCGCUCCaCGuGuCG- -5'
5553 3' -56.4 NC_001806.1 + 19502 0.67 0.831803
Target:  5'- gGGCGCuUGCGCuUGCGc-GUGCcCAGg -3'
miRNA:   3'- -CCGUGuACGCG-ACGCucCACGuGUCg -5'
5553 3' -56.4 NC_001806.1 + 100903 0.67 0.82334
Target:  5'- cGCgACGUGCGCgaacagcgUGCGAucggGGUGCGCcucgccccccaGGCg -3'
miRNA:   3'- cCG-UGUACGCG--------ACGCU----CCACGUG-----------UCG- -5'
5553 3' -56.4 NC_001806.1 + 24436 0.67 0.814703
Target:  5'- cGGCaACGUGCGCUacCGc-GUGCGCAcGCg -3'
miRNA:   3'- -CCG-UGUACGCGAc-GCucCACGUGU-CG- -5'
5553 3' -56.4 NC_001806.1 + 25920 0.67 0.814703
Target:  5'- gGGCgGCGUGCGCgcgcgcggcggGCGuGGggGCGgGGCc -3'
miRNA:   3'- -CCG-UGUACGCGa----------CGCuCCa-CGUgUCG- -5'
5553 3' -56.4 NC_001806.1 + 127898 0.67 0.814703
Target:  5'- aGGCGCggGUGCaGCGGa--GCACGGCc -3'
miRNA:   3'- -CCGUGuaCGCGaCGCUccaCGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 25703 0.68 0.805897
Target:  5'- gGGUACGUcuggaGgaGCggGAGGUGCGCGGUg -3'
miRNA:   3'- -CCGUGUAcg---CgaCG--CUCCACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 26805 0.68 0.805897
Target:  5'- uGGCGCGccUGCGcCUGCGAc--GCGCGGg -3'
miRNA:   3'- -CCGUGU--ACGC-GACGCUccaCGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 95553 0.68 0.805897
Target:  5'- gGGCGC-UGCGUccGCGAGcaGCGCGGg -3'
miRNA:   3'- -CCGUGuACGCGa-CGCUCcaCGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 117750 0.68 0.796934
Target:  5'- uGCACGUGCGUgGCGuGGcG-ACGGCc -3'
miRNA:   3'- cCGUGUACGCGaCGCuCCaCgUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 116159 0.68 0.778566
Target:  5'- cGGCGCugcaGCGCUGCGAaGG-GCGggUGGUa -3'
miRNA:   3'- -CCGUGua--CGCGACGCU-CCaCGU--GUCG- -5'
5553 3' -56.4 NC_001806.1 + 109934 0.68 0.778566
Target:  5'- uGGCAaucuccccGgGCUGCGAGGcaCACGGCc -3'
miRNA:   3'- -CCGUgua-----CgCGACGCUCCacGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 67245 0.68 0.769179
Target:  5'- aGGCAgGU-CG--GCGGGGUGCcGCAGCg -3'
miRNA:   3'- -CCGUgUAcGCgaCGCUCCACG-UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 76546 0.69 0.750046
Target:  5'- gGGuCACGgcgGgGCUGCggGAGGUGCugGccGCg -3'
miRNA:   3'- -CC-GUGUa--CgCGACG--CUCCACGugU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.