miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5553 5' -57.4 NC_001806.1 + 91175 0.67 0.791583
Target:  5'- cGGcCGcGGCCCGCGccaACGcCGUCGg- -3'
miRNA:   3'- aCCaGCaCCGGGCGU---UGCuGCAGUga -5'
5553 5' -57.4 NC_001806.1 + 91981 0.7 0.62606
Target:  5'- aGGUCGUGGaCCGCGAgGugGagcaGCUg -3'
miRNA:   3'- aCCAGCACCgGGCGUUgCugCag--UGA- -5'
5553 5' -57.4 NC_001806.1 + 93882 0.7 0.676415
Target:  5'- cGGUCGgcgGGCCCGCGG-GAgGcCGCc -3'
miRNA:   3'- aCCAGCa--CCGGGCGUUgCUgCaGUGa -5'
5553 5' -57.4 NC_001806.1 + 98716 0.68 0.779811
Target:  5'- uUGGUCcUGGCCgGCcuGGCGGCGgccuucuucgccuuUCGCUa -3'
miRNA:   3'- -ACCAGcACCGGgCG--UUGCUGC--------------AGUGA- -5'
5553 5' -57.4 NC_001806.1 + 102251 0.77 0.286378
Target:  5'- aGGUUGUGGCCCcggcugaggaacGCGGCGGCGgCGCg -3'
miRNA:   3'- aCCAGCACCGGG------------CGUUGCUGCaGUGa -5'
5553 5' -57.4 NC_001806.1 + 102297 0.66 0.88005
Target:  5'- -cGUCGUGGUgCGCcACGcCGUCGg- -3'
miRNA:   3'- acCAGCACCGgGCGuUGCuGCAGUga -5'
5553 5' -57.4 NC_001806.1 + 106366 0.67 0.809227
Target:  5'- cGGUUGgGGCCCGgcggcaccCGACGACGgagcuggacaUCACg -3'
miRNA:   3'- aCCAGCaCCGGGC--------GUUGCUGC----------AGUGa -5'
5553 5' -57.4 NC_001806.1 + 106500 0.66 0.85047
Target:  5'- ---aCGUGGCCCGUgggcaucugGACGACGggggaGCUg -3'
miRNA:   3'- accaGCACCGGGCG---------UUGCUGCag---UGA- -5'
5553 5' -57.4 NC_001806.1 + 107619 0.66 0.858169
Target:  5'- cGGUCGaaguccUGGCCCaGCAgacccACGGCcUCGCc -3'
miRNA:   3'- aCCAGC------ACCGGG-CGU-----UGCUGcAGUGa -5'
5553 5' -57.4 NC_001806.1 + 114942 0.68 0.782547
Target:  5'- -cGUCGUGGCCacggcaaccgucCGCAACccCGUCACc -3'
miRNA:   3'- acCAGCACCGG------------GCGUUGcuGCAGUGa -5'
5553 5' -57.4 NC_001806.1 + 131448 0.67 0.817819
Target:  5'- cGGUaCGUGGUcguCCGCGGacCGGCGgCGCUg -3'
miRNA:   3'- aCCA-GCACCG---GGCGUU--GCUGCaGUGA- -5'
5553 5' -57.4 NC_001806.1 + 131872 0.7 0.666382
Target:  5'- -cGUCGUGGCggccgcccgcgCCGCGACGACGcCGg- -3'
miRNA:   3'- acCAGCACCG-----------GGCGUUGCUGCaGUga -5'
5553 5' -57.4 NC_001806.1 + 135800 0.69 0.72588
Target:  5'- cUGGUCcUGGCCCGCAgacccGCGGCuGUuucCGCc -3'
miRNA:   3'- -ACCAGcACCGGGCGU-----UGCUG-CA---GUGa -5'
5553 5' -57.4 NC_001806.1 + 138445 1.07 0.003176
Target:  5'- cUGGUCGUGGCCCGCAACGACGUCACUu -3'
miRNA:   3'- -ACCAGCACCGGGCGUUGCUGCAGUGA- -5'
5553 5' -57.4 NC_001806.1 + 144483 0.67 0.809227
Target:  5'- gUGGUgcUGUGGCCUGUuuuuGCuGCGUCAUc -3'
miRNA:   3'- -ACCA--GCACCGGGCGu---UGcUGCAGUGa -5'
5553 5' -57.4 NC_001806.1 + 146857 0.68 0.745178
Target:  5'- gGGgacCGcGGCCCGCAGCcGgGUCGCc -3'
miRNA:   3'- aCCa--GCaCCGGGCGUUGcUgCAGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.