miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 635 0.66 0.580691
Target:  5'- uCCCCGgccCCAGcCCUCCCCGGCc----- -3'
miRNA:   3'- uGGGGC---GGUU-GGAGGGGCCGaccugc -5'
5554 3' -63.9 NC_001806.1 + 667 0.66 0.580691
Target:  5'- uCCCCGgccCCAGcCCUCCCCGGCc----- -3'
miRNA:   3'- uGGGGC---GGUU-GGAGGGGCCGaccugc -5'
5554 3' -63.9 NC_001806.1 + 715 0.68 0.460552
Target:  5'- uCCCCGgccCCAGcCCUCCCCGGC---GCGu -3'
miRNA:   3'- uGGGGC---GGUU-GGAGGGGCCGaccUGC- -5'
5554 3' -63.9 NC_001806.1 + 2315 0.74 0.193688
Target:  5'- gGCCCCGCCGccggccagguCCUCgCCCGGCaGcGGCGa -3'
miRNA:   3'- -UGGGGCGGUu---------GGAG-GGGCCGaC-CUGC- -5'
5554 3' -63.9 NC_001806.1 + 2706 0.68 0.443198
Target:  5'- uGCCgCCGCCAGCCgCCCagggGGUcgGGGCc -3'
miRNA:   3'- -UGG-GGCGGUUGGaGGGg---CCGa-CCUGc -5'
5554 3' -63.9 NC_001806.1 + 2783 0.66 0.542629
Target:  5'- cGCCgCGgCGGCCcggggcgCCgCgGGCUGGGCGg -3'
miRNA:   3'- -UGGgGCgGUUGGa------GG-GgCCGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 3340 0.67 0.521113
Target:  5'- cUCCgGCCGcggggggcuggcggGCCgggCCCCGGCcagccccgGGACGg -3'
miRNA:   3'- uGGGgCGGU--------------UGGa--GGGGCCGa-------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 3588 0.68 0.460552
Target:  5'- uCCCCGCgGcGCCguaCCCGGC-GGGCa -3'
miRNA:   3'- uGGGGCGgU-UGGag-GGGCCGaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 5523 0.69 0.369977
Target:  5'- gGCCCC-CCGcCC-CCCCGGC-GGGCc -3'
miRNA:   3'- -UGGGGcGGUuGGaGGGGCCGaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 10906 0.67 0.478258
Target:  5'- uCCUCGCCGACaCUCaCCCGuCUccaGGACGu -3'
miRNA:   3'- uGGGGCGGUUG-GAG-GGGCcGA---CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 14773 0.67 0.496294
Target:  5'- cCCCCGCCccauACCcuaCCCGcGUUcGGACGg -3'
miRNA:   3'- uGGGGCGGu---UGGag-GGGC-CGA-CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 16935 0.67 0.478258
Target:  5'- cACCCgGgaCGGCUuugUCUCCGGCgGGACGg -3'
miRNA:   3'- -UGGGgCg-GUUGG---AGGGGCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 17471 0.69 0.401491
Target:  5'- gUCCgGCCAACCUUCgaCGGUUGGcCGa -3'
miRNA:   3'- uGGGgCGGUUGGAGGg-GCCGACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 20163 0.66 0.533236
Target:  5'- cCCCCGCCGcccggGCCcgCCCCcggGGCcGGcGCGg -3'
miRNA:   3'- uGGGGCGGU-----UGGa-GGGG---CCGaCC-UGC- -5'
5554 3' -63.9 NC_001806.1 + 20297 0.66 0.549236
Target:  5'- gGCCCCGCCc-CCUuggggcggucccgcCCgCCGGCcaauggggGGGCGg -3'
miRNA:   3'- -UGGGGCGGuuGGA--------------GG-GGCCGa-------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 20368 0.67 0.487237
Target:  5'- -gCCCGCCGucCCguuggUCCCGGCguccggcGGGCGg -3'
miRNA:   3'- ugGGGCGGUu-GGa----GGGGCCGa------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 20765 0.66 0.590302
Target:  5'- uUCCCGCCGGCC-CCUgGGaCUauaugagcccgaGGACGc -3'
miRNA:   3'- uGGGGCGGUUGGaGGGgCC-GA------------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 21254 0.75 0.175727
Target:  5'- gACCCCGaCCAcccccacgACCUCgacgacgCCCGGCgGGACGg -3'
miRNA:   3'- -UGGGGC-GGU--------UGGAG-------GGGCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 21496 0.74 0.20783
Target:  5'- cGCCgCCGgCGACCgggCCCCGGCccgGGGCc -3'
miRNA:   3'- -UGG-GGCgGUUGGa--GGGGCCGa--CCUGc -5'
5554 3' -63.9 NC_001806.1 + 21793 0.68 0.426219
Target:  5'- gGCgCCGgCAGCC-CCCgGGC-GGACGc -3'
miRNA:   3'- -UGgGGCgGUUGGaGGGgCCGaCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.