miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 33341 0.66 0.590302
Target:  5'- cGCCCC-UUGGCCgCCCCGGCUgcagggGGGCc -3'
miRNA:   3'- -UGGGGcGGUUGGaGGGGCCGA------CCUGc -5'
5554 3' -63.9 NC_001806.1 + 2315 0.74 0.193688
Target:  5'- gGCCCCGCCGccggccagguCCUCgCCCGGCaGcGGCGa -3'
miRNA:   3'- -UGGGGCGGUu---------GGAG-GGGCCGaC-CUGC- -5'
5554 3' -63.9 NC_001806.1 + 77167 0.74 0.193688
Target:  5'- gGCCCaacaCGCCGACCUgagCgCCCGGCUgcgGGACGa -3'
miRNA:   3'- -UGGG----GCGGUUGGA---G-GGGCCGA---CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 21496 0.74 0.20783
Target:  5'- cGCCgCCGgCGACCgggCCCCGGCccgGGGCc -3'
miRNA:   3'- -UGG-GGCgGUUGGa--GGGGCCGa--CCUGc -5'
5554 3' -63.9 NC_001806.1 + 101904 0.74 0.20783
Target:  5'- -aCCCGaCCGGCCgCCCCGcCUGGGCGu -3'
miRNA:   3'- ugGGGC-GGUUGGaGGGGCcGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 131884 0.73 0.211256
Target:  5'- cGCCCgCGCCGcgacgacgccggccGCCUCCCCG-CUGGAg- -3'
miRNA:   3'- -UGGG-GCGGU--------------UGGAGGGGCcGACCUgc -5'
5554 3' -63.9 NC_001806.1 + 104933 0.73 0.222341
Target:  5'- cAUCCCGCCGACCUUgCCCGGCacaaacaucguguUGGGgGc -3'
miRNA:   3'- -UGGGGCGGUUGGAG-GGGCCG-------------ACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 30266 0.73 0.23338
Target:  5'- gGCCCgGCCc-CCgcgCCCCGGCccccgGGGCGg -3'
miRNA:   3'- -UGGGgCGGuuGGa--GGGGCCGa----CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 26512 0.73 0.23338
Target:  5'- cGCCCCGCCGccGCC-CCCCG-CcGGugGg -3'
miRNA:   3'- -UGGGGCGGU--UGGaGGGGCcGaCCugC- -5'
5554 3' -63.9 NC_001806.1 + 29842 0.74 0.189164
Target:  5'- aGCCCC-CCAGCCggCCgCGGCUcGGACa -3'
miRNA:   3'- -UGGGGcGGUUGGa-GGgGCCGA-CCUGc -5'
5554 3' -63.9 NC_001806.1 + 21254 0.75 0.175727
Target:  5'- gACCCCGaCCAcccccacgACCUCgacgacgCCCGGCgGGACGg -3'
miRNA:   3'- -UGGGGC-GGU--------UGGAG-------GGGCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 45151 0.75 0.167917
Target:  5'- cCCCCGacCCAAgCUgUCCGGCUGGACa -3'
miRNA:   3'- uGGGGC--GGUUgGAgGGGCCGACCUGc -5'
5554 3' -63.9 NC_001806.1 + 35484 0.79 0.090784
Target:  5'- aAUUCCGCCAACCUCCuCCGGagaGGGCGa -3'
miRNA:   3'- -UGGGGCGGUUGGAGG-GGCCga-CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 74877 0.78 0.102623
Target:  5'- gACCCUGCgGGCCUCCCUgccggcgGGCUGGuCGg -3'
miRNA:   3'- -UGGGGCGgUUGGAGGGG-------CCGACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 22704 0.77 0.12855
Target:  5'- cGCCgCGCCcGCCUCCCCcGCgggGGGCGa -3'
miRNA:   3'- -UGGgGCGGuUGGAGGGGcCGa--CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 22179 0.76 0.138351
Target:  5'- cGCCCCGgCGGCCgugugggCgCCCGaGCUGGGCGa -3'
miRNA:   3'- -UGGGGCgGUUGGa------G-GGGC-CGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 41704 0.75 0.160033
Target:  5'- -gCCCGCCGuguCCUCCCCGGgaCUGG-CGg -3'
miRNA:   3'- ugGGGCGGUu--GGAGGGGCC--GACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 65646 0.75 0.160033
Target:  5'- gGCCCCGgCGGCCUCCCCcuggguGGCUGcGCu -3'
miRNA:   3'- -UGGGGCgGUUGGAGGGG------CCGACcUGc -5'
5554 3' -63.9 NC_001806.1 + 22902 0.75 0.167917
Target:  5'- -gCCCGCCAGCCcCCCgCGGCcGGAgGg -3'
miRNA:   3'- ugGGGCGGUUGGaGGG-GCCGaCCUgC- -5'
5554 3' -63.9 NC_001806.1 + 31094 0.75 0.167917
Target:  5'- gACCCgGCUgcgGGCCgcggUCCCCGGCUGGAg- -3'
miRNA:   3'- -UGGGgCGG---UUGG----AGGGGCCGACCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.