Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5554 | 3' | -63.9 | NC_001806.1 | + | 59863 | 0.66 | 0.561572 |
Target: 5'- -gCCCGCaCGACggCCCaGGCcGGACGg -3' miRNA: 3'- ugGGGCG-GUUGgaGGGgCCGaCCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 96519 | 0.66 | 0.555869 |
Target: 5'- gGCCCUGCCAcuccggcgccGCCcgCCCCuGGCgcccccccaacgggGGACc -3' miRNA: 3'- -UGGGGCGGU----------UGGa-GGGG-CCGa-------------CCUGc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 44693 | 0.66 | 0.553023 |
Target: 5'- gGCCCCGagcgcccccuccaaCCAAggaucuucgcguaucCCggCCCCGGUUGGAgGg -3' miRNA: 3'- -UGGGGC--------------GGUU---------------GGa-GGGGCCGACCUgC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 23519 | 0.66 | 0.552076 |
Target: 5'- -gCCCGCCGAgggCCCCGaccccCUGGGCGg -3' miRNA: 3'- ugGGGCGGUUggaGGGGCc----GACCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 150873 | 0.66 | 0.552076 |
Target: 5'- gGCUCCGCgGGCCagggCCCgGGCacGGGCc -3' miRNA: 3'- -UGGGGCGgUUGGa---GGGgCCGa-CCUGc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 106351 | 0.66 | 0.552076 |
Target: 5'- cGCCCCcCCGACCg--CCGGUUGGGg- -3' miRNA: 3'- -UGGGGcGGUUGGaggGGCCGACCUgc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 68483 | 0.66 | 0.552076 |
Target: 5'- cCCCCGaCCAgGCCUUCCgGGagaUGGAgGu -3' miRNA: 3'- uGGGGC-GGU-UGGAGGGgCCg--ACCUgC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 106749 | 0.66 | 0.551129 |
Target: 5'- uCCCUgacgcggGCCGACaacggCUCCGcGCUGGACGc -3' miRNA: 3'- uGGGG-------CGGUUGga---GGGGC-CGACCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 20297 | 0.66 | 0.549236 |
Target: 5'- gGCCCCGCCc-CCUuggggcggucccgcCCgCCGGCcaauggggGGGCGg -3' miRNA: 3'- -UGGGGCGGuuGGA--------------GG-GGCCGa-------CCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 2783 | 0.66 | 0.542629 |
Target: 5'- cGCCgCGgCGGCCcggggcgCCgCgGGCUGGGCGg -3' miRNA: 3'- -UGGgGCgGUUGGa------GG-GgCCGACCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 29801 | 0.66 | 0.542629 |
Target: 5'- gGCgCCGCCGcGCC-CCCCgugacgGGCgGGGCGu -3' miRNA: 3'- -UGgGGCGGU-UGGaGGGG------CCGaCCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 98551 | 0.66 | 0.542629 |
Target: 5'- aACgCCGCCAugUUUgCgGGCcUGGGCGc -3' miRNA: 3'- -UGgGGCGGUugGAGgGgCCG-ACCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 143525 | 0.66 | 0.542629 |
Target: 5'- aACCCCGCCcACCcggCCCGGCccGGCc -3' miRNA: 3'- -UGGGGCGGuUGGag-GGGCCGacCUGc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 53182 | 0.66 | 0.533236 |
Target: 5'- uGCagCGCCGGCCUCCCCGuacaUUGaGGCGg -3' miRNA: 3'- -UGggGCGGUUGGAGGGGCc---GAC-CUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 114197 | 0.66 | 0.533236 |
Target: 5'- gACCCCGCgCAcccCCUgcaCCCGGCcaaucUGGugGc -3' miRNA: 3'- -UGGGGCG-GUu--GGAg--GGGCCG-----ACCugC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 20163 | 0.66 | 0.533236 |
Target: 5'- cCCCCGCCGcccggGCCcgCCCCcggGGCcGGcGCGg -3' miRNA: 3'- uGGGGCGGU-----UGGa-GGGG---CCGaCC-UGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 30222 | 0.66 | 0.533236 |
Target: 5'- cCCCCGCgCGGCCguggCCCCGuGCgu-GCGa -3' miRNA: 3'- uGGGGCG-GUUGGa---GGGGC-CGaccUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 24805 | 0.66 | 0.533236 |
Target: 5'- gGCCCUGCCGccggcGCCgCCCgGgauucGCUGGGCc -3' miRNA: 3'- -UGGGGCGGU-----UGGaGGGgC-----CGACCUGc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 119330 | 0.67 | 0.523901 |
Target: 5'- gACCCC-CCcAUCUCCCCGGa-GGAg- -3' miRNA: 3'- -UGGGGcGGuUGGAGGGGCCgaCCUgc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 99968 | 0.67 | 0.523901 |
Target: 5'- gACCCCGCgCGgcgcgccucgaGCCUCCCCGG--GGuaguACGg -3' miRNA: 3'- -UGGGGCG-GU-----------UGGAGGGGCCgaCC----UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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