miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 59863 0.66 0.561572
Target:  5'- -gCCCGCaCGACggCCCaGGCcGGACGg -3'
miRNA:   3'- ugGGGCG-GUUGgaGGGgCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 96519 0.66 0.555869
Target:  5'- gGCCCUGCCAcuccggcgccGCCcgCCCCuGGCgcccccccaacgggGGACc -3'
miRNA:   3'- -UGGGGCGGU----------UGGa-GGGG-CCGa-------------CCUGc -5'
5554 3' -63.9 NC_001806.1 + 44693 0.66 0.553023
Target:  5'- gGCCCCGagcgcccccuccaaCCAAggaucuucgcguaucCCggCCCCGGUUGGAgGg -3'
miRNA:   3'- -UGGGGC--------------GGUU---------------GGa-GGGGCCGACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 23519 0.66 0.552076
Target:  5'- -gCCCGCCGAgggCCCCGaccccCUGGGCGg -3'
miRNA:   3'- ugGGGCGGUUggaGGGGCc----GACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 150873 0.66 0.552076
Target:  5'- gGCUCCGCgGGCCagggCCCgGGCacGGGCc -3'
miRNA:   3'- -UGGGGCGgUUGGa---GGGgCCGa-CCUGc -5'
5554 3' -63.9 NC_001806.1 + 106351 0.66 0.552076
Target:  5'- cGCCCCcCCGACCg--CCGGUUGGGg- -3'
miRNA:   3'- -UGGGGcGGUUGGaggGGCCGACCUgc -5'
5554 3' -63.9 NC_001806.1 + 68483 0.66 0.552076
Target:  5'- cCCCCGaCCAgGCCUUCCgGGagaUGGAgGu -3'
miRNA:   3'- uGGGGC-GGU-UGGAGGGgCCg--ACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 106749 0.66 0.551129
Target:  5'- uCCCUgacgcggGCCGACaacggCUCCGcGCUGGACGc -3'
miRNA:   3'- uGGGG-------CGGUUGga---GGGGC-CGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 20297 0.66 0.549236
Target:  5'- gGCCCCGCCc-CCUuggggcggucccgcCCgCCGGCcaauggggGGGCGg -3'
miRNA:   3'- -UGGGGCGGuuGGA--------------GG-GGCCGa-------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 2783 0.66 0.542629
Target:  5'- cGCCgCGgCGGCCcggggcgCCgCgGGCUGGGCGg -3'
miRNA:   3'- -UGGgGCgGUUGGa------GG-GgCCGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 29801 0.66 0.542629
Target:  5'- gGCgCCGCCGcGCC-CCCCgugacgGGCgGGGCGu -3'
miRNA:   3'- -UGgGGCGGU-UGGaGGGG------CCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 98551 0.66 0.542629
Target:  5'- aACgCCGCCAugUUUgCgGGCcUGGGCGc -3'
miRNA:   3'- -UGgGGCGGUugGAGgGgCCG-ACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 143525 0.66 0.542629
Target:  5'- aACCCCGCCcACCcggCCCGGCccGGCc -3'
miRNA:   3'- -UGGGGCGGuUGGag-GGGCCGacCUGc -5'
5554 3' -63.9 NC_001806.1 + 53182 0.66 0.533236
Target:  5'- uGCagCGCCGGCCUCCCCGuacaUUGaGGCGg -3'
miRNA:   3'- -UGggGCGGUUGGAGGGGCc---GAC-CUGC- -5'
5554 3' -63.9 NC_001806.1 + 114197 0.66 0.533236
Target:  5'- gACCCCGCgCAcccCCUgcaCCCGGCcaaucUGGugGc -3'
miRNA:   3'- -UGGGGCG-GUu--GGAg--GGGCCG-----ACCugC- -5'
5554 3' -63.9 NC_001806.1 + 20163 0.66 0.533236
Target:  5'- cCCCCGCCGcccggGCCcgCCCCcggGGCcGGcGCGg -3'
miRNA:   3'- uGGGGCGGU-----UGGa-GGGG---CCGaCC-UGC- -5'
5554 3' -63.9 NC_001806.1 + 30222 0.66 0.533236
Target:  5'- cCCCCGCgCGGCCguggCCCCGuGCgu-GCGa -3'
miRNA:   3'- uGGGGCG-GUUGGa---GGGGC-CGaccUGC- -5'
5554 3' -63.9 NC_001806.1 + 24805 0.66 0.533236
Target:  5'- gGCCCUGCCGccggcGCCgCCCgGgauucGCUGGGCc -3'
miRNA:   3'- -UGGGGCGGU-----UGGaGGGgC-----CGACCUGc -5'
5554 3' -63.9 NC_001806.1 + 119330 0.67 0.523901
Target:  5'- gACCCC-CCcAUCUCCCCGGa-GGAg- -3'
miRNA:   3'- -UGGGGcGGuUGGAGGGGCCgaCCUgc -5'
5554 3' -63.9 NC_001806.1 + 99968 0.67 0.523901
Target:  5'- gACCCCGCgCGgcgcgccucgaGCCUCCCCGG--GGuaguACGg -3'
miRNA:   3'- -UGGGGCG-GU-----------UGGAGGGGCCgaCC----UGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.