miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 5' -55.4 NC_001806.1 + 145540 0.66 0.90216
Target:  5'- -aCUgCCugGGGGGGGgGAGUGCGg- -3'
miRNA:   3'- agGAgGGugUUUCUCCaCUCGCGCau -5'
5554 5' -55.4 NC_001806.1 + 98020 0.66 0.90216
Target:  5'- gCCUCggCCACcguGGGccggcGGGUGAGCGCGc- -3'
miRNA:   3'- aGGAG--GGUGu--UUC-----UCCACUCGCGCau -5'
5554 5' -55.4 NC_001806.1 + 83245 0.66 0.888847
Target:  5'- cCCUcaagggCCCGCGGGGGGGcGGGCGaCGg- -3'
miRNA:   3'- aGGA------GGGUGUUUCUCCaCUCGC-GCau -5'
5554 5' -55.4 NC_001806.1 + 147332 0.66 0.888847
Target:  5'- cCCggCCCugAGucGGAGGggGGGUGCGUc -3'
miRNA:   3'- aGGa-GGGugUU--UCUCCa-CUCGCGCAu -5'
5554 5' -55.4 NC_001806.1 + 140622 0.66 0.888847
Target:  5'- -gCUCUCGCAcucGAGcGGcGUGGGCGCGUu -3'
miRNA:   3'- agGAGGGUGU---UUC-UC-CACUCGCGCAu -5'
5554 5' -55.4 NC_001806.1 + 80909 0.67 0.867143
Target:  5'- -aCUCCCA---AGAGGUGAcGCGCu-- -3'
miRNA:   3'- agGAGGGUguuUCUCCACU-CGCGcau -5'
5554 5' -55.4 NC_001806.1 + 4384 0.67 0.867143
Target:  5'- gUCCUCgCCGCcgcccGGGGcuUGGGCGCGg- -3'
miRNA:   3'- -AGGAG-GGUGuuu--CUCC--ACUCGCGCau -5'
5554 5' -55.4 NC_001806.1 + 40533 0.67 0.867143
Target:  5'- aUCUCCCGgGGGGAagcgagauaGGUGGGCgggGCGUGa -3'
miRNA:   3'- aGGAGGGUgUUUCU---------CCACUCG---CGCAU- -5'
5554 5' -55.4 NC_001806.1 + 83800 0.67 0.859466
Target:  5'- gCCUCCggggGCGAGGAGG-GGGCGgGg- -3'
miRNA:   3'- aGGAGGg---UGUUUCUCCaCUCGCgCau -5'
5554 5' -55.4 NC_001806.1 + 35494 0.67 0.859466
Target:  5'- aCCUCCUcCGGAGAGGgcGAG-GCGUc -3'
miRNA:   3'- aGGAGGGuGUUUCUCCa-CUCgCGCAu -5'
5554 5' -55.4 NC_001806.1 + 132769 0.68 0.835194
Target:  5'- cUCCUgCCCGCGgugcGGGAGGcgGuGGCGCGg- -3'
miRNA:   3'- -AGGA-GGGUGU----UUCUCCa-C-UCGCGCau -5'
5554 5' -55.4 NC_001806.1 + 48042 0.68 0.81805
Target:  5'- aCCUCCCGCu----GGUGcgcAGCGCGg- -3'
miRNA:   3'- aGGAGGGUGuuucuCCAC---UCGCGCau -5'
5554 5' -55.4 NC_001806.1 + 74733 0.68 0.81805
Target:  5'- -gCUCCCugGAGgcaaugcucGAGG-GAGCGCGg- -3'
miRNA:   3'- agGAGGGugUUU---------CUCCaCUCGCGCau -5'
5554 5' -55.4 NC_001806.1 + 101790 0.68 0.800211
Target:  5'- aCCUCCC-CAcAGGGGUGGgguuuGUGCGg- -3'
miRNA:   3'- aGGAGGGuGUuUCUCCACU-----CGCGCau -5'
5554 5' -55.4 NC_001806.1 + 2979 0.68 0.800211
Target:  5'- cCCUCCCGCGgcgcgGGGAGGcGgcggcggccgccAGCGCGUc -3'
miRNA:   3'- aGGAGGGUGU-----UUCUCCaC------------UCGCGCAu -5'
5554 5' -55.4 NC_001806.1 + 58346 0.69 0.781746
Target:  5'- gCCUggCCCGCcuu--GGUGAGCGCGUu -3'
miRNA:   3'- aGGA--GGGUGuuucuCCACUCGCGCAu -5'
5554 5' -55.4 NC_001806.1 + 69055 0.7 0.692918
Target:  5'- uUCgCagCCGCGAGGAGGUGcGCGUGUc -3'
miRNA:   3'- -AG-GagGGUGUUUCUCCACuCGCGCAu -5'
5554 5' -55.4 NC_001806.1 + 16417 0.7 0.692918
Target:  5'- cCCUCCgAUccuGGGGUGAGCGCu-- -3'
miRNA:   3'- aGGAGGgUGuuuCUCCACUCGCGcau -5'
5554 5' -55.4 NC_001806.1 + 45313 0.7 0.692918
Target:  5'- gCCgCCCgGCGAGGAGGgcGGGCGCGa- -3'
miRNA:   3'- aGGaGGG-UGUUUCUCCa-CUCGCGCau -5'
5554 5' -55.4 NC_001806.1 + 117053 0.71 0.651666
Target:  5'- cCCggcuagaCCCACGGGGGGGUGGGgGUGg- -3'
miRNA:   3'- aGGa------GGGUGUUUCUCCACUCgCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.