miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 5' -56.8 NC_001806.1 + 135827 1.07 0.002837
Target:  5'- gUUUCCGCCCUUGCCGAAUCCAGGGAGg -3'
miRNA:   3'- -AAAGGCGGGAACGGCUUAGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 107265 0.75 0.380826
Target:  5'- ---aCGCCCUguaUGCCGAGuuUCUAGGGGGc -3'
miRNA:   3'- aaagGCGGGA---ACGGCUU--AGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 147362 0.74 0.397703
Target:  5'- --gCCGCCCUcuuggccccUGCCGGcgCgAGGGGGg -3'
miRNA:   3'- aaaGGCGGGA---------ACGGCUuaGgUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 89308 0.72 0.498456
Target:  5'- --gCCGCCCUggccGCCGAcuuuccUCCGGGGGa -3'
miRNA:   3'- aaaGGCGGGAa---CGGCUu-----AGGUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 46129 0.71 0.568126
Target:  5'- -cUCCGCCacccGCUGggUCCGGaGGGGc -3'
miRNA:   3'- aaAGGCGGgaa-CGGCuuAGGUC-CCUC- -5'
5555 5' -56.8 NC_001806.1 + 43696 0.71 0.598787
Target:  5'- -cUCCGCCUucggggUUGCCGGgggaacccgGUCgGGGGGGa -3'
miRNA:   3'- aaAGGCGGG------AACGGCU---------UAGgUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 83310 0.7 0.629671
Target:  5'- --cCCGCCC---CCGGAUCCcuguGGGGAGg -3'
miRNA:   3'- aaaGGCGGGaacGGCUUAGG----UCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 57352 0.7 0.629671
Target:  5'- --cCCGuCCCUgGCCGuccUCCGGGGAc -3'
miRNA:   3'- aaaGGC-GGGAaCGGCuu-AGGUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 137577 0.7 0.639979
Target:  5'- ---gCGCCCUgGCCGccUCCGGGGGc -3'
miRNA:   3'- aaagGCGGGAaCGGCuuAGGUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 70329 0.69 0.681067
Target:  5'- ---aCGCCCUgGCCGc--CCGGGGGGu -3'
miRNA:   3'- aaagGCGGGAaCGGCuuaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 26635 0.69 0.681067
Target:  5'- --cCCGCCCgaGCCGGcgCCAGaGGc- -3'
miRNA:   3'- aaaGGCGGGaaCGGCUuaGGUC-CCuc -5'
5555 5' -56.8 NC_001806.1 + 147676 0.69 0.701401
Target:  5'- -cUCCGCCCcggggGCCGGggCgCGGGGGc -3'
miRNA:   3'- aaAGGCGGGaa---CGGCUuaG-GUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 132907 0.69 0.711484
Target:  5'- --gCgGCCCUgGCCGAccUCGGGGGGa -3'
miRNA:   3'- aaaGgCGGGAaCGGCUuaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 45836 0.68 0.751037
Target:  5'- --gCCGCuCCgugaaGUCGggUCCGcGGGAGg -3'
miRNA:   3'- aaaGGCG-GGaa---CGGCuuAGGU-CCCUC- -5'
5555 5' -56.8 NC_001806.1 + 71803 0.68 0.760683
Target:  5'- gUUCgCGCCCgacCUGGAgCCGGGGGGg -3'
miRNA:   3'- aAAG-GCGGGaacGGCUUaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 73985 0.68 0.770214
Target:  5'- --cCCGCCCcgGCCGGGgcggCCccgcAGGGGGc -3'
miRNA:   3'- aaaGGCGGGaaCGGCUUa---GG----UCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 57794 0.68 0.770214
Target:  5'- --gUCGUCCU--CCGuGUCCAGGGGGa -3'
miRNA:   3'- aaaGGCGGGAacGGCuUAGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 5577 0.67 0.798021
Target:  5'- --cCCGCCCcgacGCCGGcacgCCGGGGGc -3'
miRNA:   3'- aaaGGCGGGaa--CGGCUua--GGUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 137067 0.67 0.798021
Target:  5'- --aCCGaCCa--GCCGu-UCCAGGGAGg -3'
miRNA:   3'- aaaGGC-GGgaaCGGCuuAGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 132524 0.67 0.806107
Target:  5'- --cCCGUCUUUGCCuuucuggggcccGAguuugagGUCCGGGGGGg -3'
miRNA:   3'- aaaGGCGGGAACGG------------CU-------UAGGUCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.