Results 61 - 80 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 56517 | 0.67 | 0.843426 |
Target: 5'- cAGCGGcaggcCCGgGcCCGGCGuucCCCGGGCa -3' miRNA: 3'- cUUGCUu----GGCgUuGGCCGU---GGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 19202 | 0.67 | 0.818524 |
Target: 5'- --gUGAGCCGCA---GGUuuACCCGGGCc -3' miRNA: 3'- cuuGCUUGGCGUuggCCG--UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 94846 | 0.67 | 0.818524 |
Target: 5'- aGAACGAcucgguCCGCAaggagGCCGaCGCCCugcuggAGGCg -3' miRNA: 3'- -CUUGCUu-----GGCGU-----UGGCcGUGGG------UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 2008 | 0.67 | 0.818524 |
Target: 5'- aGGCGugcuGCCGCGacACCGcGgGCCCGucGGCg -3' miRNA: 3'- cUUGCu---UGGCGU--UGGC-CgUGGGU--CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 3189 | 0.67 | 0.854475 |
Target: 5'- cGGCGGccucGCUGCcGCCGGCcacgcgcagguccccGCgCAGGCg -3' miRNA: 3'- cUUGCU----UGGCGuUGGCCG---------------UGgGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 120841 | 0.67 | 0.851357 |
Target: 5'- --cCGGcauGgCGCAGCUGGgACCCcGGCg -3' miRNA: 3'- cuuGCU---UgGCGUUGGCCgUGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 84868 | 0.67 | 0.843426 |
Target: 5'- -cGCGcuccuCUGCGGCCGGCGggacUCUGGGCg -3' miRNA: 3'- cuUGCuu---GGCGUUGGCCGU----GGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 100721 | 0.67 | 0.834483 |
Target: 5'- --gUGggUCaGCGccuccacGCCgGGCGCCCAGGUg -3' miRNA: 3'- cuuGCuuGG-CGU-------UGG-CCGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 38798 | 0.67 | 0.835305 |
Target: 5'- --cCGuuCCGCuuccGCgGGgACCCGGGCg -3' miRNA: 3'- cuuGCuuGGCGu---UGgCCgUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 79697 | 0.67 | 0.842622 |
Target: 5'- --cCGGGCaCGCuccCUGGCgcgcgccACCCAGGCu -3' miRNA: 3'- cuuGCUUG-GCGuu-GGCCG-------UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 22470 | 0.67 | 0.835305 |
Target: 5'- -cAUGAGCCGCcgauacGACCGcGCGCagaaGGGCu -3' miRNA: 3'- cuUGCUUGGCG------UUGGC-CGUGgg--UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 112859 | 0.67 | 0.843426 |
Target: 5'- gGAACGGuuuGCCGCGcacGCCGGggaccuagucccCGCCCccGGCc -3' miRNA: 3'- -CUUGCU---UGGCGU---UGGCC------------GUGGGu-CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 49639 | 0.67 | 0.835305 |
Target: 5'- gGGACGcguGCCGgGcCCGGaGCuCCGGGCg -3' miRNA: 3'- -CUUGCu--UGGCgUuGGCCgUG-GGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 78296 | 0.67 | 0.835305 |
Target: 5'- --cCGaAACCGaccccCUGGCGCCCuGGCg -3' miRNA: 3'- cuuGC-UUGGCguu--GGCCGUGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 106330 | 0.67 | 0.823631 |
Target: 5'- cGAGCGGGCCGCgugauacAccgcccccccgaccGCCGGUugggGCCC-GGCg -3' miRNA: 3'- -CUUGCUUGGCG-------U--------------UGGCCG----UGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 143388 | 0.67 | 0.827002 |
Target: 5'- cGGCGAcaaCGCuccCCGGCGgCCGGGUc -3' miRNA: 3'- cUUGCUug-GCGuu-GGCCGUgGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 3592 | 0.67 | 0.830345 |
Target: 5'- -cGCGGcGCCGUAcCCGGCgggcaccgcgcgcucGCCCGGuGCg -3' miRNA: 3'- cuUGCU-UGGCGUuGGCCG---------------UGGGUC-CG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 144215 | 0.67 | 0.827002 |
Target: 5'- --cCGAcACCGCAgaGCCGGCGCgCGcacucacaagcGGCa -3' miRNA: 3'- cuuGCU-UGGCGU--UGGCCGUGgGU-----------CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 3357 | 0.67 | 0.835305 |
Target: 5'- uGGCGGGCCGgGccCCGGCcagcCCCGGGa -3' miRNA: 3'- cUUGCUUGGCgUu-GGCCGu---GGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 79931 | 0.67 | 0.827002 |
Target: 5'- ------gUCGCAACCGGCacgguuuuGCCCGGGg -3' miRNA: 3'- cuugcuuGGCGUUGGCCG--------UGGGUCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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