miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 56517 0.67 0.843426
Target:  5'- cAGCGGcaggcCCGgGcCCGGCGuucCCCGGGCa -3'
miRNA:   3'- cUUGCUu----GGCgUuGGCCGU---GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 19202 0.67 0.818524
Target:  5'- --gUGAGCCGCA---GGUuuACCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCGUuggCCG--UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 94846 0.67 0.818524
Target:  5'- aGAACGAcucgguCCGCAaggagGCCGaCGCCCugcuggAGGCg -3'
miRNA:   3'- -CUUGCUu-----GGCGU-----UGGCcGUGGG------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 2008 0.67 0.818524
Target:  5'- aGGCGugcuGCCGCGacACCGcGgGCCCGucGGCg -3'
miRNA:   3'- cUUGCu---UGGCGU--UGGC-CgUGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 3189 0.67 0.854475
Target:  5'- cGGCGGccucGCUGCcGCCGGCcacgcgcagguccccGCgCAGGCg -3'
miRNA:   3'- cUUGCU----UGGCGuUGGCCG---------------UGgGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 120841 0.67 0.851357
Target:  5'- --cCGGcauGgCGCAGCUGGgACCCcGGCg -3'
miRNA:   3'- cuuGCU---UgGCGUUGGCCgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 84868 0.67 0.843426
Target:  5'- -cGCGcuccuCUGCGGCCGGCGggacUCUGGGCg -3'
miRNA:   3'- cuUGCuu---GGCGUUGGCCGU----GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100721 0.67 0.834483
Target:  5'- --gUGggUCaGCGccuccacGCCgGGCGCCCAGGUg -3'
miRNA:   3'- cuuGCuuGG-CGU-------UGG-CCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 38798 0.67 0.835305
Target:  5'- --cCGuuCCGCuuccGCgGGgACCCGGGCg -3'
miRNA:   3'- cuuGCuuGGCGu---UGgCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 79697 0.67 0.842622
Target:  5'- --cCGGGCaCGCuccCUGGCgcgcgccACCCAGGCu -3'
miRNA:   3'- cuuGCUUG-GCGuu-GGCCG-------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22470 0.67 0.835305
Target:  5'- -cAUGAGCCGCcgauacGACCGcGCGCagaaGGGCu -3'
miRNA:   3'- cuUGCUUGGCG------UUGGC-CGUGgg--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 112859 0.67 0.843426
Target:  5'- gGAACGGuuuGCCGCGcacGCCGGggaccuagucccCGCCCccGGCc -3'
miRNA:   3'- -CUUGCU---UGGCGU---UGGCC------------GUGGGu-CCG- -5'
5556 3' -56.7 NC_001806.1 + 49639 0.67 0.835305
Target:  5'- gGGACGcguGCCGgGcCCGGaGCuCCGGGCg -3'
miRNA:   3'- -CUUGCu--UGGCgUuGGCCgUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 78296 0.67 0.835305
Target:  5'- --cCGaAACCGaccccCUGGCGCCCuGGCg -3'
miRNA:   3'- cuuGC-UUGGCguu--GGCCGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 106330 0.67 0.823631
Target:  5'- cGAGCGGGCCGCgugauacAccgcccccccgaccGCCGGUugggGCCC-GGCg -3'
miRNA:   3'- -CUUGCUUGGCG-------U--------------UGGCCG----UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 143388 0.67 0.827002
Target:  5'- cGGCGAcaaCGCuccCCGGCGgCCGGGUc -3'
miRNA:   3'- cUUGCUug-GCGuu-GGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3592 0.67 0.830345
Target:  5'- -cGCGGcGCCGUAcCCGGCgggcaccgcgcgcucGCCCGGuGCg -3'
miRNA:   3'- cuUGCU-UGGCGUuGGCCG---------------UGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 144215 0.67 0.827002
Target:  5'- --cCGAcACCGCAgaGCCGGCGCgCGcacucacaagcGGCa -3'
miRNA:   3'- cuuGCU-UGGCGU--UGGCCGUGgGU-----------CCG- -5'
5556 3' -56.7 NC_001806.1 + 3357 0.67 0.835305
Target:  5'- uGGCGGGCCGgGccCCGGCcagcCCCGGGa -3'
miRNA:   3'- cUUGCUUGGCgUu-GGCCGu---GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 79931 0.67 0.827002
Target:  5'- ------gUCGCAACCGGCacgguuuuGCCCGGGg -3'
miRNA:   3'- cuugcuuGGCGUUGGCCG--------UGGGUCCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.