miRNA display CGI


Results 81 - 100 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 132439 0.67 0.858327
Target:  5'- cGGCGAGaaguucuCCGC-GCCGGCGCUCGucgcccuuuuccGGCa -3'
miRNA:   3'- cUUGCUU-------GGCGuUGGCCGUGGGU------------CCG- -5'
5556 3' -56.7 NC_001806.1 + 2701 0.67 0.843426
Target:  5'- gGGGCu-GCCGCcGCCaGcCGCCCAGGg -3'
miRNA:   3'- -CUUGcuUGGCGuUGGcC-GUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 68174 0.67 0.851357
Target:  5'- cGGACGGACC-UAugCaGCGCCUAuuGGCg -3'
miRNA:   3'- -CUUGCUUGGcGUugGcCGUGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 147658 0.67 0.851357
Target:  5'- -cGCGGGgCggGCGGCCGGCuccgcCCCGGGg -3'
miRNA:   3'- cuUGCUUgG--CGUUGGCCGu----GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 33978 0.67 0.859092
Target:  5'- -uGCGGGCCGgGggucGCCGGgGCagGGGCg -3'
miRNA:   3'- cuUGCUUGGCgU----UGGCCgUGggUCCG- -5'
5556 3' -56.7 NC_001806.1 + 64409 0.67 0.858327
Target:  5'- --uUGGAUCGCAGCCacuccucaaaggaGGCcuCCCGGGUc -3'
miRNA:   3'- cuuGCUUGGCGUUGG-------------CCGu-GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 29957 0.67 0.859092
Target:  5'- -cGCGAGCCGC----GGCGCCgCGGGg -3'
miRNA:   3'- cuUGCUUGGCGuuggCCGUGG-GUCCg -5'
5556 3' -56.7 NC_001806.1 + 4124 0.67 0.818524
Target:  5'- cGGGCGccccccagaGGCCcggGCGGCUGuCGCCCAGGCc -3'
miRNA:   3'- -CUUGC---------UUGG---CGUUGGCcGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 4030 0.67 0.818524
Target:  5'- aGGGCGuACUGCuGCgCGGCgucgcccaGCUCGGGCg -3'
miRNA:   3'- -CUUGCuUGGCGuUG-GCCG--------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 24204 0.67 0.843426
Target:  5'- -uGCGcGCCuGCGACUGGCccGCCgaCGGGCc -3'
miRNA:   3'- cuUGCuUGG-CGUUGGCCG--UGG--GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 120841 0.67 0.851357
Target:  5'- --cCGGcauGgCGCAGCUGGgACCCcGGCg -3'
miRNA:   3'- cuuGCU---UgGCGUUGGCCgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 56517 0.67 0.843426
Target:  5'- cAGCGGcaggcCCGgGcCCGGCGuucCCCGGGCa -3'
miRNA:   3'- cUUGCUu----GGCgUuGGCCGU---GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 136093 0.67 0.848998
Target:  5'- uGACGGACgcgguauugCGCAGCCGGCAgacgugcgcguguuCCCGGa- -3'
miRNA:   3'- cUUGCUUG---------GCGUUGGCCGU--------------GGGUCcg -5'
5556 3' -56.7 NC_001806.1 + 51602 0.67 0.859092
Target:  5'- aGGugGAGCUGC--CCGGCGgCCAGu- -3'
miRNA:   3'- -CUugCUUGGCGuuGGCCGUgGGUCcg -5'
5556 3' -56.7 NC_001806.1 + 46197 0.67 0.851357
Target:  5'- cAGCGggUgGCGACUaaGGCcCCCGcGGCc -3'
miRNA:   3'- cUUGCuuGgCGUUGG--CCGuGGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 3189 0.67 0.854475
Target:  5'- cGGCGGccucGCUGCcGCCGGCcacgcgcagguccccGCgCAGGCg -3'
miRNA:   3'- cUUGCU----UGGCGuUGGCCG---------------UGgGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 83661 0.68 0.809878
Target:  5'- --cCGuACCGaCGGCgGgGUGCCCGGGCg -3'
miRNA:   3'- cuuGCuUGGC-GUUGgC-CGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100097 0.68 0.809878
Target:  5'- aGggUcucCCGCGGCCGGCugaccGCCCGccuGGCg -3'
miRNA:   3'- -CuuGcuuGGCGUUGGCCG-----UGGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 126860 0.68 0.809878
Target:  5'- uAACGuuCCGCcuggaggaCGGCGCCgGGGCu -3'
miRNA:   3'- cUUGCuuGGCGuug-----GCCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 135590 0.68 0.801073
Target:  5'- ----cGGCCGCGcgcuGCUGGCGCuCCAGGg -3'
miRNA:   3'- cuugcUUGGCGU----UGGCCGUG-GGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.