miRNA display CGI


Results 101 - 120 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 77422 0.68 0.764431
Target:  5'- cGugGAucuUCGCGcccuagacGCCcGCGCCCGGGCg -3'
miRNA:   3'- cUugCUu--GGCGU--------UGGcCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 130459 0.68 0.764431
Target:  5'- ---gGAGCUGCGguGCCGGgAUCCcgAGGCg -3'
miRNA:   3'- cuugCUUGGCGU--UGGCCgUGGG--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 120894 0.68 0.773788
Target:  5'- gGGACcuuGCCcCGGCCGGauuCCCGGGCc -3'
miRNA:   3'- -CUUGcu-UGGcGUUGGCCgu-GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3894 0.68 0.772858
Target:  5'- uGAAgGAGCUGCuguugcGCgCGGCGCCCgagauccggaagcAGGCc -3'
miRNA:   3'- -CUUgCUUGGCGu-----UG-GCCGUGGG-------------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 24312 0.68 0.763488
Target:  5'- -cGCGGgaccugcGCCGCAcgguGCUGGC-CUCGGGCc -3'
miRNA:   3'- cuUGCU-------UGGCGU----UGGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 40384 0.68 0.780264
Target:  5'- cGACGGucccccCCGCAuCCGGCuguacguuguaccgACCCAGGa -3'
miRNA:   3'- cUUGCUu-----GGCGUuGGCCG--------------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 73348 0.68 0.78302
Target:  5'- -uACGGucGCCGUAuCCGGCcucuCCgGGGCu -3'
miRNA:   3'- cuUGCU--UGGCGUuGGCCGu---GGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 33119 0.68 0.78302
Target:  5'- cGGACGGggcccggaccGCCGCggUCGGgGgccccucguCCCGGGCc -3'
miRNA:   3'- -CUUGCU----------UGGCGuuGGCCgU---------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 126860 0.68 0.809878
Target:  5'- uAACGuuCCGCcuggaggaCGGCGCCgGGGCu -3'
miRNA:   3'- cUUGCuuGGCGuug-----GCCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 83661 0.68 0.809878
Target:  5'- --cCGuACCGaCGGCgGgGUGCCCGGGCg -3'
miRNA:   3'- cuuGCuUGGC-GUUGgC-CGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 49267 0.68 0.809878
Target:  5'- cGACGAGCCGC--CCGuGCGCCgucgacgggaAGGCc -3'
miRNA:   3'- cUUGCUUGGCGuuGGC-CGUGGg---------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 37595 0.68 0.809878
Target:  5'- --uUGGcCCGCcagcACCGGgGCCCAGGg -3'
miRNA:   3'- cuuGCUuGGCGu---UGGCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 4368 0.68 0.801073
Target:  5'- -cGCGGagGCCGCGgggguccucGCCGcCGCCCGGGg -3'
miRNA:   3'- cuUGCU--UGGCGU---------UGGCcGUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 135590 0.68 0.801073
Target:  5'- ----cGGCCGCGcgcuGCUGGCGCuCCAGGg -3'
miRNA:   3'- cuugcUUGGCGU----UGGCCGUG-GGUCCg -5'
5556 3' -56.7 NC_001806.1 + 112239 0.68 0.801073
Target:  5'- cAACG-GCCGC--CUGGCcaccagggugGCCCGGGCg -3'
miRNA:   3'- cUUGCuUGGCGuuGGCCG----------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 99945 0.68 0.801073
Target:  5'- uGGCGGGCCGCGcGCCGGgAgucgacCCCGcgcGGCg -3'
miRNA:   3'- cUUGCUUGGCGU-UGGCCgU------GGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 23983 0.68 0.801073
Target:  5'- cGGCGGGCUGUccugccuGCUGGCGgCCCuGGCc -3'
miRNA:   3'- cUUGCUUGGCGu------UGGCCGU-GGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 133447 0.68 0.801073
Target:  5'- -cGCGAcacGCUGCGACgGGU-CCUGGGCc -3'
miRNA:   3'- cuUGCU---UGGCGUUGgCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 109239 0.68 0.78302
Target:  5'- cGGGCGGGgCGgAAUCcugGGC-CCCGGGCa -3'
miRNA:   3'- -CUUGCUUgGCgUUGG---CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 108161 0.68 0.78302
Target:  5'- --cCGuGGCCGCAAUU-GCGCCCGGGUu -3'
miRNA:   3'- cuuGC-UUGGCGUUGGcCGUGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.