miRNA display CGI


Results 121 - 140 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 99945 0.68 0.801073
Target:  5'- uGGCGGGCCGCGcGCCGGgAgucgacCCCGcgcGGCg -3'
miRNA:   3'- cUUGCUUGGCGU-UGGCCgU------GGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 135590 0.68 0.801073
Target:  5'- ----cGGCCGCGcgcuGCUGGCGCuCCAGGg -3'
miRNA:   3'- cuugcUUGGCGU----UGGCCGUG-GGUCCg -5'
5556 3' -56.7 NC_001806.1 + 37595 0.68 0.809878
Target:  5'- --uUGGcCCGCcagcACCGGgGCCCAGGg -3'
miRNA:   3'- cuuGCUuGGCGu---UGGCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 23983 0.68 0.801073
Target:  5'- cGGCGGGCUGUccugccuGCUGGCGgCCCuGGCc -3'
miRNA:   3'- cUUGCUUGGCGu------UGGCCGU-GGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 93564 0.68 0.801073
Target:  5'- aGGACGAcaaCGCGACgccguuCGGCGgCCCGGGg -3'
miRNA:   3'- -CUUGCUug-GCGUUG------GCCGU-GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 3833 0.68 0.792118
Target:  5'- aAGCGGccgGCCGCca-UGGCguaGCCCAGGUg -3'
miRNA:   3'- cUUGCU---UGGCGuugGCCG---UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 49267 0.68 0.809878
Target:  5'- cGACGAGCCGC--CCGuGCGCCgucgacgggaAGGCc -3'
miRNA:   3'- cUUGCUUGGCGuuGGC-CGUGGg---------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 83661 0.68 0.809878
Target:  5'- --cCGuACCGaCGGCgGgGUGCCCGGGCg -3'
miRNA:   3'- cuuGCuUGGC-GUUGgC-CGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100097 0.68 0.809878
Target:  5'- aGggUcucCCGCGGCCGGCugaccGCCCGccuGGCg -3'
miRNA:   3'- -CuuGcuuGGCGUUGGCCG-----UGGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 126860 0.68 0.809878
Target:  5'- uAACGuuCCGCcuggaggaCGGCGCCgGGGCu -3'
miRNA:   3'- cUUGCuuGGCGuug-----GCCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 132354 0.68 0.809878
Target:  5'- aGGugGGcCUGCGGCCacgcgGGCACCCGcaacgagucacGGCa -3'
miRNA:   3'- -CUugCUuGGCGUUGG-----CCGUGGGU-----------CCG- -5'
5556 3' -56.7 NC_001806.1 + 36392 0.68 0.773788
Target:  5'- aAACGGccgcgcacACCGCAGCC-GCACCCcGcGCu -3'
miRNA:   3'- cUUGCU--------UGGCGUUGGcCGUGGGuC-CG- -5'
5556 3' -56.7 NC_001806.1 + 4368 0.68 0.801073
Target:  5'- -cGCGGagGCCGCGgggguccucGCCGcCGCCCGGGg -3'
miRNA:   3'- cuUGCU--UGGCGU---------UGGCcGUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 136030 0.69 0.745378
Target:  5'- uAACGAcCCGCGcggcACCGGCcACCCcGcGCu -3'
miRNA:   3'- cUUGCUuGGCGU----UGGCCG-UGGGuC-CG- -5'
5556 3' -56.7 NC_001806.1 + 35580 0.69 0.754958
Target:  5'- cGAACGacGugCGCAgcGCCGGaguuuugGCCCuGGCg -3'
miRNA:   3'- -CUUGC--UugGCGU--UGGCCg------UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 27050 0.69 0.754958
Target:  5'- --uCGGGCCGUGcCUGGgGCCCgAGGCc -3'
miRNA:   3'- cuuGCUUGGCGUuGGCCgUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 22637 0.69 0.754958
Target:  5'- cGGGCGAGCgCGCGguGCCcgccggguacGGCGCCgCGGGg -3'
miRNA:   3'- -CUUGCUUG-GCGU--UGG----------CCGUGG-GUCCg -5'
5556 3' -56.7 NC_001806.1 + 17145 0.69 0.745378
Target:  5'- cGGACGccuCCGCuGCCGGuCGCUCcaaGGGCc -3'
miRNA:   3'- -CUUGCuu-GGCGuUGGCC-GUGGG---UCCG- -5'
5556 3' -56.7 NC_001806.1 + 22565 0.69 0.754958
Target:  5'- uGACGGggGCCGCGGggagccCCGGCGCC--GGCg -3'
miRNA:   3'- cUUGCU--UGGCGUU------GGCCGUGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 32961 0.69 0.749222
Target:  5'- --cCGGGCCGgGGCCccuuggguccgccggGGC-CCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCgUUGG---------------CCGuGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.