miRNA display CGI


Results 141 - 160 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 21568 0.69 0.716086
Target:  5'- -cACGGACCGCcugucGCC-GCGCCCGccGGCc -3'
miRNA:   3'- cuUGCUUGGCGu----UGGcCGUGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 26248 0.69 0.716086
Target:  5'- aAGCGGug-GCGGCgGGCAgCCCGGGCc -3'
miRNA:   3'- cUUGCUuggCGUUGgCCGU-GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 31270 0.69 0.716086
Target:  5'- uGGACuu-CCGCAGCCugcggucucGGCACCCGuGGUc -3'
miRNA:   3'- -CUUGcuuGGCGUUGG---------CCGUGGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 43296 0.69 0.7357
Target:  5'- aGGCgGAGCCGCGGCUgcaGGagGCCCuGGCg -3'
miRNA:   3'- cUUG-CUUGGCGUUGG---CCg-UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 77128 0.69 0.7357
Target:  5'- cGAGCGGGCCGgGGCCguGGaggaGCUCGGGg -3'
miRNA:   3'- -CUUGCUUGGCgUUGG--CCg---UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 24639 0.69 0.7357
Target:  5'- uGGGCGcgccGCUGCGGCCcguguacguGGCGCUgGGGCg -3'
miRNA:   3'- -CUUGCu---UGGCGUUGG---------CCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 27050 0.69 0.754958
Target:  5'- --uCGGGCCGUGcCUGGgGCCCgAGGCc -3'
miRNA:   3'- cuuGCUUGGCGUuGGCCgUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 22637 0.69 0.754958
Target:  5'- cGGGCGAGCgCGCGguGCCcgccggguacGGCGCCgCGGGg -3'
miRNA:   3'- -CUUGCUUG-GCGU--UGG----------CCGUGG-GUCCg -5'
5556 3' -56.7 NC_001806.1 + 134821 0.69 0.754958
Target:  5'- uGGCGGuaaACCGCGGCUGGCggucgccgACCUGGcGCa -3'
miRNA:   3'- cUUGCU---UGGCGUUGGCCG--------UGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 22565 0.69 0.754958
Target:  5'- uGACGGggGCCGCGGggagccCCGGCGCC--GGCg -3'
miRNA:   3'- cUUGCU--UGGCGUU------GGCCGUGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 32961 0.69 0.749222
Target:  5'- --cCGGGCCGgGGCCccuuggguccgccggGGC-CCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCgUUGG---------------CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1982 0.69 0.7357
Target:  5'- cGGCGGGCaGCAGCU-GCACgCCAGGUa -3'
miRNA:   3'- cUUGCUUGgCGUUGGcCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 17145 0.69 0.745378
Target:  5'- cGGACGccuCCGCuGCCGGuCGCUCcaaGGGCc -3'
miRNA:   3'- -CUUGCuu-GGCGuUGGCC-GUGGG---UCCG- -5'
5556 3' -56.7 NC_001806.1 + 151531 0.69 0.745378
Target:  5'- ---gGGACgGCGcCCGuGgGCCCGGGCg -3'
miRNA:   3'- cuugCUUGgCGUuGGC-CgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 76069 0.69 0.745378
Target:  5'- cGGGgGGGCUGCugGAgCGG-GCCCAGGCg -3'
miRNA:   3'- -CUUgCUUGGCG--UUgGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 69248 0.69 0.745378
Target:  5'- gGAGC-AGCC-CuccGCCGGCGCCCAGcaGCg -3'
miRNA:   3'- -CUUGcUUGGcGu--UGGCCGUGGGUC--CG- -5'
5556 3' -56.7 NC_001806.1 + 50621 0.69 0.745378
Target:  5'- uGGCG-ACCGUGACCuuaaaguaCGCCCGGGCg -3'
miRNA:   3'- cUUGCuUGGCGUUGGcc------GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 5088 0.69 0.744414
Target:  5'- gGggUGGGCgGCGGCCcgucgguGGgGCCCGGGg -3'
miRNA:   3'- -CuuGCUUGgCGUUGG-------CCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 73195 0.69 0.7357
Target:  5'- aGACucGCCGCucgcCCGaGCcCCCGGGCg -3'
miRNA:   3'- cUUGcuUGGCGuu--GGC-CGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 63164 0.69 0.7357
Target:  5'- -cAUGGACCGCAgguugucguuGCCGcggguGCACUgGGGCg -3'
miRNA:   3'- cuUGCUUGGCGU----------UGGC-----CGUGGgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.