miRNA display CGI


Results 161 - 180 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 76069 0.69 0.745378
Target:  5'- cGGGgGGGCUGCugGAgCGG-GCCCAGGCg -3'
miRNA:   3'- -CUUgCUUGGCG--UUgGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 151531 0.69 0.745378
Target:  5'- ---gGGACgGCGcCCGuGgGCCCGGGCg -3'
miRNA:   3'- cuugCUUGgCGUuGGC-CgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 17145 0.69 0.745378
Target:  5'- cGGACGccuCCGCuGCCGGuCGCUCcaaGGGCc -3'
miRNA:   3'- -CUUGCuu-GGCGuUGGCC-GUGGG---UCCG- -5'
5556 3' -56.7 NC_001806.1 + 136030 0.69 0.745378
Target:  5'- uAACGAcCCGCGcggcACCGGCcACCCcGcGCu -3'
miRNA:   3'- cUUGCUuGGCGU----UGGCCG-UGGGuC-CG- -5'
5556 3' -56.7 NC_001806.1 + 32961 0.69 0.749222
Target:  5'- --cCGGGCCGgGGCCccuuggguccgccggGGC-CCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCgUUGG---------------CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 69248 0.69 0.745378
Target:  5'- gGAGC-AGCC-CuccGCCGGCGCCCAGcaGCg -3'
miRNA:   3'- -CUUGcUUGGcGu--UGGCCGUGGGUC--CG- -5'
5556 3' -56.7 NC_001806.1 + 135404 0.7 0.706168
Target:  5'- ---aGAGgCGCGACaGGCGCuCCAGGUc -3'
miRNA:   3'- cuugCUUgGCGUUGgCCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 95045 0.7 0.686157
Target:  5'- -cGCGGugGCCGUggAACUGGCGCUguuCGGGCg -3'
miRNA:   3'- cuUGCU--UGGCG--UUGGCCGUGG---GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 18433 0.7 0.686157
Target:  5'- -cGCGAcCCGCcccagAAUCGGauggGCCCGGGCg -3'
miRNA:   3'- cuUGCUuGGCG-----UUGGCCg---UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3456 0.7 0.686157
Target:  5'- cGACGGcCaCGCGGCCGGCcugggcgcggcGCCC-GGCg -3'
miRNA:   3'- cUUGCUuG-GCGUUGGCCG-----------UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 23709 0.7 0.686157
Target:  5'- --uCGAucGCCGCGcggugcGCCGGgcccgcccccgcCGCCCAGGCc -3'
miRNA:   3'- cuuGCU--UGGCGU------UGGCC------------GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3122 0.7 0.686157
Target:  5'- -cGCGGgucccGCgGCAGCgCGGgGCCCAGGg -3'
miRNA:   3'- cuUGCU-----UGgCGUUG-GCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 150854 0.7 0.695188
Target:  5'- aGAcCGAguucGCCG-GGCCGGCuccgcgggccaggGCCCGGGCa -3'
miRNA:   3'- -CUuGCU----UGGCgUUGGCCG-------------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 135546 0.7 0.696189
Target:  5'- aGGGCGGcuGCCGCAuccACCGGuCACggacucggccgCCAGGUc -3'
miRNA:   3'- -CUUGCU--UGGCGU---UGGCC-GUG-----------GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 101897 0.7 0.696189
Target:  5'- -cGCGucGACC-CGACCGGCcgccccGCCUGGGCg -3'
miRNA:   3'- cuUGC--UUGGcGUUGGCCG------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 70932 0.7 0.706168
Target:  5'- gGAGCGcGCCGUggUCguGGCGCCCuuGGUc -3'
miRNA:   3'- -CUUGCuUGGCGuuGG--CCGUGGGu-CCG- -5'
5556 3' -56.7 NC_001806.1 + 121906 0.7 0.706168
Target:  5'- -uACGAGuuGCcccACCGuuGCCCGGGCc -3'
miRNA:   3'- cuUGCUUggCGu--UGGCcgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 128042 0.7 0.706168
Target:  5'- cGACGAugCccgugGCGGCCacGGCcCCCAGGUg -3'
miRNA:   3'- cUUGCUugG-----CGUUGG--CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22145 0.7 0.706168
Target:  5'- cGGAgGAGgCGCGacGCCGGUucgagGCCuCGGGCg -3'
miRNA:   3'- -CUUgCUUgGCGU--UGGCCG-----UGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 23581 0.7 0.686157
Target:  5'- cGGCGGcgcCCGCGGCCGcCGCCCuggAGGCc -3'
miRNA:   3'- cUUGCUu--GGCGUUGGCcGUGGG---UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.