miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 105430 0.71 0.645671
Target:  5'- cGACGAuCUGCGACCuGGCgcgcacguuuGCCCGGGa -3'
miRNA:   3'- cUUGCUuGGCGUUGG-CCG----------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 28000 0.71 0.625332
Target:  5'- gGAGCGAGaCGCAGCagccaGGCagACUCGGGCc -3'
miRNA:   3'- -CUUGCUUgGCGUUGg----CCG--UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1651 0.71 0.625332
Target:  5'- -uGCGAGugggccuccuccUCGCAGaaguCCGGCGCgCCGGGCg -3'
miRNA:   3'- cuUGCUU------------GGCGUU----GGCCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 49907 0.71 0.59488
Target:  5'- uGACGGAUCGUcgaacaaaAACCaGCcccGCCCAGGCg -3'
miRNA:   3'- cUUGCUUGGCG--------UUGGcCG---UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 57093 0.71 0.59488
Target:  5'- aGAACaaGGGCCGCuccACCGGCcgccaguuugAgCCAGGCg -3'
miRNA:   3'- -CUUG--CUUGGCGu--UGGCCG----------UgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 89442 0.71 0.59488
Target:  5'- gGGugGGAUgGCAaaauuACCGGaCcCCCAGGCu -3'
miRNA:   3'- -CUugCUUGgCGU-----UGGCC-GuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 6060 0.71 0.59488
Target:  5'- --cCGAcuCCGC-GCCGGCcccgggggcggGCCCGGGCg -3'
miRNA:   3'- cuuGCUu-GGCGuUGGCCG-----------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1439 0.71 0.605013
Target:  5'- cGGGCGGcGCCgGCGGCagGGCcCCCGGGCc -3'
miRNA:   3'- -CUUGCU-UGG-CGUUGg-CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 90401 0.71 0.622281
Target:  5'- -uACGucuuucACgGCGGCCGGCaccuggaccccagcACCCAGGCc -3'
miRNA:   3'- cuUGCu-----UGgCGUUGGCCG--------------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 94716 0.71 0.624315
Target:  5'- cAACGAGCUGCGG-CGGUACCUgccccacgccgccGGGCu -3'
miRNA:   3'- cUUGCUUGGCGUUgGCCGUGGG-------------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 118106 0.7 0.67608
Target:  5'- aGAACGGGCCGgucgucGCCGGUcuCCCuGGCc -3'
miRNA:   3'- -CUUGCUUGGCgu----UGGCCGu-GGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 3648 0.7 0.674061
Target:  5'- cGGCGAcccccucgucauCUGC-GCCGGCGCCgGGGCu -3'
miRNA:   3'- cUUGCUu-----------GGCGuUGGCCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 147558 0.7 0.665968
Target:  5'- --cCGAGCCGCGcgccACCGucgcacGCGCCC-GGCa -3'
miRNA:   3'- cuuGCUUGGCGU----UGGC------CGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 71936 0.7 0.665968
Target:  5'- gGGGCGAguggacGCgCGCGACCGcGgGCCCuGGGCc -3'
miRNA:   3'- -CUUGCU------UG-GCGUUGGC-CgUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 41486 0.7 0.665968
Target:  5'- cGAGCGucCCGCGuuauGCgGGCccagucguCCCAGGCc -3'
miRNA:   3'- -CUUGCuuGGCGU----UGgCCGu-------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3429 0.7 0.665968
Target:  5'- ---gGAucCCGCGGCaGGCGgCCAGGCa -3'
miRNA:   3'- cuugCUu-GGCGUUGgCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 96623 0.7 0.665968
Target:  5'- cGGCGAcaaCGCGACCGuCGCCgCGGGCc -3'
miRNA:   3'- cUUGCUug-GCGUUGGCcGUGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 21291 0.7 0.664956
Target:  5'- gGGACGGGagggcccCCGCGGCgGGCACCgAcgccGGCg -3'
miRNA:   3'- -CUUGCUU-------GGCGUUGgCCGUGGgU----CCG- -5'
5556 3' -56.7 NC_001806.1 + 66832 0.7 0.655829
Target:  5'- cGggUGGccggugugcGCCGCcucCUGGgGCCCGGGCa -3'
miRNA:   3'- -CuuGCU---------UGGCGuu-GGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 92927 0.7 0.67608
Target:  5'- gGGGCGGGCCuggaGGCCGGgGCCCGcGCg -3'
miRNA:   3'- -CUUGCUUGGcg--UUGGCCgUGGGUcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.