miRNA display CGI


Results 81 - 100 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 135404 0.7 0.706168
Target:  5'- ---aGAGgCGCGACaGGCGCuCCAGGUc -3'
miRNA:   3'- cuugCUUgGCGUUGgCCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 128042 0.7 0.706168
Target:  5'- cGACGAugCccgugGCGGCCacGGCcCCCAGGUg -3'
miRNA:   3'- cUUGCUugG-----CGUUGG--CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22145 0.7 0.706168
Target:  5'- cGGAgGAGgCGCGacGCCGGUucgagGCCuCGGGCg -3'
miRNA:   3'- -CUUgCUUgGCGU--UGGCCG-----UGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3122 0.7 0.686157
Target:  5'- -cGCGGgucccGCgGCAGCgCGGgGCCCAGGg -3'
miRNA:   3'- cuUGCU-----UGgCGUUG-GCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 113986 0.7 0.685151
Target:  5'- --cCGAGCCGCGgacgccgcggaugACCGGCcGCaCCGGGg -3'
miRNA:   3'- cuuGCUUGGCGU-------------UGGCCG-UG-GGUCCg -5'
5556 3' -56.7 NC_001806.1 + 119481 0.7 0.67608
Target:  5'- -cGCGGACCggGCGugCGGC-CUguGGCg -3'
miRNA:   3'- cuUGCUUGG--CGUugGCCGuGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 97096 0.7 0.655829
Target:  5'- -cACGAGCCGgGGCUGGCACaCCAc-- -3'
miRNA:   3'- cuUGCUUGGCgUUGGCCGUG-GGUccg -5'
5556 3' -56.7 NC_001806.1 + 66832 0.7 0.655829
Target:  5'- cGggUGGccggugugcGCCGCcucCUGGgGCCCGGGCa -3'
miRNA:   3'- -CuuGCU---------UGGCGuu-GGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 21291 0.7 0.664956
Target:  5'- gGGACGGGagggcccCCGCGGCgGGCACCgAcgccGGCg -3'
miRNA:   3'- -CUUGCUU-------GGCGUUGgCCGUGGgU----CCG- -5'
5556 3' -56.7 NC_001806.1 + 96623 0.7 0.665968
Target:  5'- cGGCGAcaaCGCGACCGuCGCCgCGGGCc -3'
miRNA:   3'- cUUGCUug-GCGUUGGCcGUGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3429 0.7 0.665968
Target:  5'- ---gGAucCCGCGGCaGGCGgCCAGGCa -3'
miRNA:   3'- cuugCUu-GGCGUUGgCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 41486 0.7 0.665968
Target:  5'- cGAGCGucCCGCGuuauGCgGGCccagucguCCCAGGCc -3'
miRNA:   3'- -CUUGCuuGGCGU----UGgCCGu-------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 71936 0.7 0.665968
Target:  5'- gGGGCGAguggacGCgCGCGACCGcGgGCCCuGGGCc -3'
miRNA:   3'- -CUUGCU------UG-GCGUUGGC-CgUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 147558 0.7 0.665968
Target:  5'- --cCGAGCCGCGcgccACCGucgcacGCGCCC-GGCa -3'
miRNA:   3'- cuuGCUUGGCGU----UGGC------CGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 3648 0.7 0.674061
Target:  5'- cGGCGAcccccucgucauCUGC-GCCGGCGCCgGGGCu -3'
miRNA:   3'- cUUGCUu-----------GGCGuUGGCCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 118106 0.7 0.67608
Target:  5'- aGAACGGGCCGgucgucGCCGGUcuCCCuGGCc -3'
miRNA:   3'- -CUUGCUUGGCgu----UGGCCGu-GGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 92927 0.7 0.67608
Target:  5'- gGGGCGGGCCuggaGGCCGGgGCCCGcGCg -3'
miRNA:   3'- -CUUGCUUGGcg--UUGGCCgUGGGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 103720 0.7 0.67608
Target:  5'- cGGCGggUgGUAACUGGCgggccgcugACUCGGGCg -3'
miRNA:   3'- cUUGCuuGgCGUUGGCCG---------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 135044 0.7 0.67608
Target:  5'- cGGGCG-ACCGCGaucuggACCGGCcccgcggggacGCgCCGGGCc -3'
miRNA:   3'- -CUUGCuUGGCGU------UGGCCG-----------UG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 26248 0.69 0.716086
Target:  5'- aAGCGGug-GCGGCgGGCAgCCCGGGCc -3'
miRNA:   3'- cUUGCUuggCGUUGgCCGU-GGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.