Results 101 - 120 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 63164 | 0.69 | 0.7357 |
Target: 5'- -cAUGGACCGCAgguugucguuGCCGcggguGCACUgGGGCg -3' miRNA: 3'- cuUGCUUGGCGU----------UGGC-----CGUGGgUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 73195 | 0.69 | 0.7357 |
Target: 5'- aGACucGCCGCucgcCCGaGCcCCCGGGCg -3' miRNA: 3'- cUUGcuUGGCGuu--GGC-CGuGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 5088 | 0.69 | 0.744414 |
Target: 5'- gGggUGGGCgGCGGCCcgucgguGGgGCCCGGGg -3' miRNA: 3'- -CuuGCUUGgCGUUGG-------CCgUGGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 50621 | 0.69 | 0.745378 |
Target: 5'- uGGCG-ACCGUGACCuuaaaguaCGCCCGGGCg -3' miRNA: 3'- cUUGCuUGGCGUUGGcc------GUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 69248 | 0.69 | 0.745378 |
Target: 5'- gGAGC-AGCC-CuccGCCGGCGCCCAGcaGCg -3' miRNA: 3'- -CUUGcUUGGcGu--UGGCCGUGGGUC--CG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 76069 | 0.69 | 0.745378 |
Target: 5'- cGGGgGGGCUGCugGAgCGG-GCCCAGGCg -3' miRNA: 3'- -CUUgCUUGGCG--UUgGCCgUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 151531 | 0.69 | 0.745378 |
Target: 5'- ---gGGACgGCGcCCGuGgGCCCGGGCg -3' miRNA: 3'- cuugCUUGgCGUuGGC-CgUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 17145 | 0.69 | 0.745378 |
Target: 5'- cGGACGccuCCGCuGCCGGuCGCUCcaaGGGCc -3' miRNA: 3'- -CUUGCuu-GGCGuUGGCC-GUGGG---UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 77128 | 0.69 | 0.7357 |
Target: 5'- cGAGCGGGCCGgGGCCguGGaggaGCUCGGGg -3' miRNA: 3'- -CUUGCUUGGCgUUGG--CCg---UGGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 43296 | 0.69 | 0.7357 |
Target: 5'- aGGCgGAGCCGCGGCUgcaGGagGCCCuGGCg -3' miRNA: 3'- cUUG-CUUGGCGUUGG---CCg-UGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 5571 | 0.69 | 0.7357 |
Target: 5'- -cACGAccCCGCcccgacGCCGGCACgCCGGGg -3' miRNA: 3'- cuUGCUu-GGCGu-----UGGCCGUG-GGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 26248 | 0.69 | 0.716086 |
Target: 5'- aAGCGGug-GCGGCgGGCAgCCCGGGCc -3' miRNA: 3'- cUUGCUuggCGUUGgCCGU-GGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 21568 | 0.69 | 0.716086 |
Target: 5'- -cACGGACCGCcugucGCC-GCGCCCGccGGCc -3' miRNA: 3'- cuUGCUUGGCGu----UGGcCGUGGGU--CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 132493 | 0.69 | 0.716086 |
Target: 5'- -cACGGuccacGCCGCccCCGGgGCCCuGGCc -3' miRNA: 3'- cuUGCU-----UGGCGuuGGCCgUGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 66433 | 0.69 | 0.725933 |
Target: 5'- gGGGCGcccCCGCAGguCCGGCugCCAgcGGUa -3' miRNA: 3'- -CUUGCuu-GGCGUU--GGCCGugGGU--CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 26614 | 0.69 | 0.72985 |
Target: 5'- cGACGAcugGCCGgAcagccccccgcccgaGCCGGCGCCagAGGCc -3' miRNA: 3'- cUUGCU---UGGCgU---------------UGGCCGUGGg-UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 20079 | 0.69 | 0.734727 |
Target: 5'- --cCGcAGCCGCucccgucguucguGGCCGGCGCCgucugCGGGCg -3' miRNA: 3'- cuuGC-UUGGCG-------------UUGGCCGUGG-----GUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 54104 | 0.69 | 0.7357 |
Target: 5'- gGAGcCGAGcCCGCAuggggggugucCCGGgGCCCAGGg -3' miRNA: 3'- -CUU-GCUU-GGCGUu----------GGCCgUGGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 1982 | 0.69 | 0.7357 |
Target: 5'- cGGCGGGCaGCAGCU-GCACgCCAGGUa -3' miRNA: 3'- cUUGCUUGgCGUUGGcCGUG-GGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 136030 | 0.69 | 0.745378 |
Target: 5'- uAACGAcCCGCGcggcACCGGCcACCCcGcGCu -3' miRNA: 3'- cUUGCUuGGCGU----UGGCCG-UGGGuC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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