miRNA display CGI


Results 121 - 140 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 132493 0.69 0.716086
Target:  5'- -cACGGuccacGCCGCccCCGGgGCCCuGGCc -3'
miRNA:   3'- cuUGCU-----UGGCGuuGGCCgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 66433 0.69 0.725933
Target:  5'- gGGGCGcccCCGCAGguCCGGCugCCAgcGGUa -3'
miRNA:   3'- -CUUGCuu-GGCGUU--GGCCGugGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 26614 0.69 0.72985
Target:  5'- cGACGAcugGCCGgAcagccccccgcccgaGCCGGCGCCagAGGCc -3'
miRNA:   3'- cUUGCU---UGGCgU---------------UGGCCGUGGg-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 20079 0.69 0.734727
Target:  5'- --cCGcAGCCGCucccgucguucguGGCCGGCGCCgucugCGGGCg -3'
miRNA:   3'- cuuGC-UUGGCG-------------UUGGCCGUGG-----GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 54104 0.69 0.7357
Target:  5'- gGAGcCGAGcCCGCAuggggggugucCCGGgGCCCAGGg -3'
miRNA:   3'- -CUU-GCUU-GGCGUu----------GGCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 1982 0.69 0.7357
Target:  5'- cGGCGGGCaGCAGCU-GCACgCCAGGUa -3'
miRNA:   3'- cUUGCUUGgCGUUGGcCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 73195 0.69 0.7357
Target:  5'- aGACucGCCGCucgcCCGaGCcCCCGGGCg -3'
miRNA:   3'- cUUGcuUGGCGuu--GGC-CGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 63164 0.69 0.7357
Target:  5'- -cAUGGACCGCAgguugucguuGCCGcggguGCACUgGGGCg -3'
miRNA:   3'- cuUGCUUGGCGU----------UGGC-----CGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 24639 0.69 0.7357
Target:  5'- uGGGCGcgccGCUGCGGCCcguguacguGGCGCUgGGGCg -3'
miRNA:   3'- -CUUGCu---UGGCGUUGG---------CCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 77128 0.69 0.7357
Target:  5'- cGAGCGGGCCGgGGCCguGGaggaGCUCGGGg -3'
miRNA:   3'- -CUUGCUUGGCgUUGG--CCg---UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 43296 0.69 0.7357
Target:  5'- aGGCgGAGCCGCGGCUgcaGGagGCCCuGGCg -3'
miRNA:   3'- cUUG-CUUGGCGUUGG---CCg-UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 5571 0.69 0.7357
Target:  5'- -cACGAccCCGCcccgacGCCGGCACgCCGGGg -3'
miRNA:   3'- cuUGCUu-GGCGu-----UGGCCGUG-GGUCCg -5'
5556 3' -56.7 NC_001806.1 + 3894 0.68 0.772858
Target:  5'- uGAAgGAGCUGCuguugcGCgCGGCGCCCgagauccggaagcAGGCc -3'
miRNA:   3'- -CUUgCUUGGCGu-----UG-GCCGUGGG-------------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 100633 0.68 0.764431
Target:  5'- cGGCGAucccggccugccGCCGCcGCuCGGC-CaCCAGGCu -3'
miRNA:   3'- cUUGCU------------UGGCGuUG-GCCGuG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 77422 0.68 0.764431
Target:  5'- cGugGAucuUCGCGcccuagacGCCcGCGCCCGGGCg -3'
miRNA:   3'- cUugCUu--GGCGU--------UGGcCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 130459 0.68 0.764431
Target:  5'- ---gGAGCUGCGguGCCGGgAUCCcgAGGCg -3'
miRNA:   3'- cuugCUUGGCGU--UGGCCgUGGG--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 125838 0.68 0.764431
Target:  5'- uGACGcGCCGCGGgcccCCGGCcgccgcggacGCCguGGCg -3'
miRNA:   3'- cUUGCuUGGCGUU----GGCCG----------UGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 103462 0.68 0.764431
Target:  5'- cAGCGGACCgGCGuCUGGCgugggaaaACCCGGGg -3'
miRNA:   3'- cUUGCUUGG-CGUuGGCCG--------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 42190 0.68 0.764431
Target:  5'- cGGACGucGGCCGCAAUaCGGCGCuCCAcGUa -3'
miRNA:   3'- -CUUGC--UUGGCGUUG-GCCGUG-GGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 120894 0.68 0.773788
Target:  5'- gGGACcuuGCCcCGGCCGGauuCCCGGGCc -3'
miRNA:   3'- -CUUGcu-UGGcGUUGGCCgu-GGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.