miRNA display CGI


Results 141 - 160 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 23923 0.68 0.801073
Target:  5'- cGGGCGAggACC-UGGCCGGCGgCgGGGCc -3'
miRNA:   3'- -CUUGCU--UGGcGUUGGCCGUgGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 23983 0.68 0.801073
Target:  5'- cGGCGGGCUGUccugccuGCUGGCGgCCCuGGCc -3'
miRNA:   3'- cUUGCUUGGCGu------UGGCCGU-GGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 99945 0.68 0.801073
Target:  5'- uGGCGGGCCGCGcGCCGGgAgucgacCCCGcgcGGCg -3'
miRNA:   3'- cUUGCUUGGCGU-UGGCCgU------GGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 112239 0.68 0.801073
Target:  5'- cAACG-GCCGC--CUGGCcaccagggugGCCCGGGCg -3'
miRNA:   3'- cUUGCuUGGCGuuGGCCG----------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 133447 0.68 0.801073
Target:  5'- -cGCGAcacGCUGCGACgGGU-CCUGGGCc -3'
miRNA:   3'- cuUGCU---UGGCGUUGgCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 33119 0.68 0.78302
Target:  5'- cGGACGGggcccggaccGCCGCggUCGGgGgccccucguCCCGGGCc -3'
miRNA:   3'- -CUUGCU----------UGGCGuuGGCCgU---------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 73348 0.68 0.78302
Target:  5'- -uACGGucGCCGUAuCCGGCcucuCCgGGGCu -3'
miRNA:   3'- cuUGCU--UGGCGUuGGCCGu---GGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 40384 0.68 0.780264
Target:  5'- cGACGGucccccCCGCAuCCGGCuguacguuguaccgACCCAGGa -3'
miRNA:   3'- cUUGCUu-----GGCGUuGGCCG--------------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 42190 0.68 0.764431
Target:  5'- cGGACGucGGCCGCAAUaCGGCGCuCCAcGUa -3'
miRNA:   3'- -CUUGC--UUGGCGUUG-GCCGUG-GGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 103462 0.68 0.764431
Target:  5'- cAGCGGACCgGCGuCUGGCgugggaaaACCCGGGg -3'
miRNA:   3'- cUUGCUUGG-CGUuGGCCG--------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 125838 0.68 0.764431
Target:  5'- uGACGcGCCGCGGgcccCCGGCcgccgcggacGCCguGGCg -3'
miRNA:   3'- cUUGCuUGGCGUU----GGCCG----------UGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 130459 0.68 0.764431
Target:  5'- ---gGAGCUGCGguGCCGGgAUCCcgAGGCg -3'
miRNA:   3'- cuugCUUGGCGU--UGGCCgUGGG--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 77422 0.68 0.764431
Target:  5'- cGugGAucuUCGCGcccuagacGCCcGCGCCCGGGCg -3'
miRNA:   3'- cUugCUu--GGCGU--------UGGcCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100633 0.68 0.764431
Target:  5'- cGGCGAucccggccugccGCCGCcGCuCGGC-CaCCAGGCu -3'
miRNA:   3'- cUUGCU------------UGGCGuUG-GCCGuG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3894 0.68 0.772858
Target:  5'- uGAAgGAGCUGCuguugcGCgCGGCGCCCgagauccggaagcAGGCc -3'
miRNA:   3'- -CUUgCUUGGCGu-----UG-GCCGUGGG-------------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 120894 0.68 0.773788
Target:  5'- gGGACcuuGCCcCGGCCGGauuCCCGGGCc -3'
miRNA:   3'- -CUUGcu-UGGcGUUGGCCgu-GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 36392 0.68 0.773788
Target:  5'- aAACGGccgcgcacACCGCAGCC-GCACCCcGcGCu -3'
miRNA:   3'- cUUGCU--------UGGCGUUGGcCGUGGGuC-CG- -5'
5556 3' -56.7 NC_001806.1 + 60595 0.68 0.773788
Target:  5'- gGGACGuuACCGgGGgccaccCCGGC-CCCAGGUc -3'
miRNA:   3'- -CUUGCu-UGGCgUU------GGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 64883 0.68 0.773788
Target:  5'- cGGCGGgaucgGCCGCAagaccagcGCCGGC-CUCuGGCg -3'
miRNA:   3'- cUUGCU-----UGGCGU--------UGGCCGuGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 129682 0.68 0.773788
Target:  5'- cGAGCGGcCCGUcuCCGGaCGCCUcuccggAGGCc -3'
miRNA:   3'- -CUUGCUuGGCGuuGGCC-GUGGG------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.