miRNA display CGI


Results 121 - 140 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 50621 0.69 0.745378
Target:  5'- uGGCG-ACCGUGACCuuaaaguaCGCCCGGGCg -3'
miRNA:   3'- cUUGCuUGGCGUUGGcc------GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 32961 0.69 0.749222
Target:  5'- --cCGGGCCGgGGCCccuuggguccgccggGGC-CCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCgUUGG---------------CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 144928 0.69 0.754958
Target:  5'- aGAUGAacacucgggguuACCGCcaacGGCCGGCcCCCGuGGCg -3'
miRNA:   3'- cUUGCU------------UGGCG----UUGGCCGuGGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 107470 0.69 0.754958
Target:  5'- --cCGGACCGC-GCUGGC--CCGGGCc -3'
miRNA:   3'- cuuGCUUGGCGuUGGCCGugGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1280 0.69 0.754958
Target:  5'- cGAACGcGCCGCcgUCGuCuucguCCCAGGCg -3'
miRNA:   3'- -CUUGCuUGGCGuuGGCcGu----GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 102482 0.69 0.754958
Target:  5'- uAGCGGuACUGUGGCCGGCcGCCCucGGUc -3'
miRNA:   3'- cUUGCU-UGGCGUUGGCCG-UGGGu-CCG- -5'
5556 3' -56.7 NC_001806.1 + 91378 0.69 0.754958
Target:  5'- --gUGGACCGCGagggacACgUGGUGCCCGGGUu -3'
miRNA:   3'- cuuGCUUGGCGU------UG-GCCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 35580 0.69 0.754958
Target:  5'- cGAACGacGugCGCAgcGCCGGaguuuugGCCCuGGCg -3'
miRNA:   3'- -CUUGC--UugGCGU--UGGCCg------UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 27050 0.69 0.754958
Target:  5'- --uCGGGCCGUGcCUGGgGCCCgAGGCc -3'
miRNA:   3'- cuuGCUUGGCGUuGGCCgUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 22637 0.69 0.754958
Target:  5'- cGGGCGAGCgCGCGguGCCcgccggguacGGCGCCgCGGGg -3'
miRNA:   3'- -CUUGCUUG-GCGU--UGG----------CCGUGG-GUCCg -5'
5556 3' -56.7 NC_001806.1 + 134821 0.69 0.754958
Target:  5'- uGGCGGuaaACCGCGGCUGGCggucgccgACCUGGcGCa -3'
miRNA:   3'- cUUGCU---UGGCGUUGGCCG--------UGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 22565 0.69 0.754958
Target:  5'- uGACGGggGCCGCGGggagccCCGGCGCC--GGCg -3'
miRNA:   3'- cUUGCU--UGGCGUU------GGCCGUGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 24312 0.68 0.763488
Target:  5'- -cGCGGgaccugcGCCGCAcgguGCUGGC-CUCGGGCc -3'
miRNA:   3'- cuUGCU-------UGGCGU----UGGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100633 0.68 0.764431
Target:  5'- cGGCGAucccggccugccGCCGCcGCuCGGC-CaCCAGGCu -3'
miRNA:   3'- cUUGCU------------UGGCGuUG-GCCGuG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 77422 0.68 0.764431
Target:  5'- cGugGAucuUCGCGcccuagacGCCcGCGCCCGGGCg -3'
miRNA:   3'- cUugCUu--GGCGU--------UGGcCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 130459 0.68 0.764431
Target:  5'- ---gGAGCUGCGguGCCGGgAUCCcgAGGCg -3'
miRNA:   3'- cuugCUUGGCGU--UGGCCgUGGG--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 125838 0.68 0.764431
Target:  5'- uGACGcGCCGCGGgcccCCGGCcgccgcggacGCCguGGCg -3'
miRNA:   3'- cUUGCuUGGCGUU----GGCCG----------UGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 103462 0.68 0.764431
Target:  5'- cAGCGGACCgGCGuCUGGCgugggaaaACCCGGGg -3'
miRNA:   3'- cUUGCUUGG-CGUuGGCCG--------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 42190 0.68 0.764431
Target:  5'- cGGACGucGGCCGCAAUaCGGCGCuCCAcGUa -3'
miRNA:   3'- -CUUGC--UUGGCGUUG-GCCGUG-GGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 3894 0.68 0.772858
Target:  5'- uGAAgGAGCUGCuguugcGCgCGGCGCCCgagauccggaagcAGGCc -3'
miRNA:   3'- -CUUgCUUGGCGu-----UG-GCCGUGGG-------------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.