Results 141 - 160 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 129682 | 0.68 | 0.773788 |
Target: 5'- cGAGCGGcCCGUcuCCGGaCGCCUcuccggAGGCc -3' miRNA: 3'- -CUUGCUuGGCGuuGGCC-GUGGG------UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 64883 | 0.68 | 0.773788 |
Target: 5'- cGGCGGgaucgGCCGCAagaccagcGCCGGC-CUCuGGCg -3' miRNA: 3'- cUUGCU-----UGGCGU--------UGGCCGuGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 60595 | 0.68 | 0.773788 |
Target: 5'- gGGACGuuACCGgGGgccaccCCGGC-CCCAGGUc -3' miRNA: 3'- -CUUGCu-UGGCgUU------GGCCGuGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 36392 | 0.68 | 0.773788 |
Target: 5'- aAACGGccgcgcacACCGCAGCC-GCACCCcGcGCu -3' miRNA: 3'- cUUGCU--------UGGCGUUGGcCGUGGGuC-CG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 120894 | 0.68 | 0.773788 |
Target: 5'- gGGACcuuGCCcCGGCCGGauuCCCGGGCc -3' miRNA: 3'- -CUUGcu-UGGcGUUGGCCgu-GGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 40384 | 0.68 | 0.780264 |
Target: 5'- cGACGGucccccCCGCAuCCGGCuguacguuguaccgACCCAGGa -3' miRNA: 3'- cUUGCUu-----GGCGUuGGCCG--------------UGGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 109239 | 0.68 | 0.78302 |
Target: 5'- cGGGCGGGgCGgAAUCcugGGC-CCCGGGCa -3' miRNA: 3'- -CUUGCUUgGCgUUGG---CCGuGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 108161 | 0.68 | 0.78302 |
Target: 5'- --cCGuGGCCGCAAUU-GCGCCCGGGUu -3' miRNA: 3'- cuuGC-UUGGCGUUGGcCGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 33119 | 0.68 | 0.78302 |
Target: 5'- cGGACGGggcccggaccGCCGCggUCGGgGgccccucguCCCGGGCc -3' miRNA: 3'- -CUUGCU----------UGGCGuuGGCCgU---------GGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 73348 | 0.68 | 0.78302 |
Target: 5'- -uACGGucGCCGUAuCCGGCcucuCCgGGGCu -3' miRNA: 3'- cuUGCU--UGGCGUuGGCCGu---GGgUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 44419 | 0.68 | 0.789403 |
Target: 5'- uGAGCGAcgACCGCcccaacacauagcaGGCCGcGgGCCC-GGCg -3' miRNA: 3'- -CUUGCU--UGGCG--------------UUGGC-CgUGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 4314 | 0.68 | 0.791214 |
Target: 5'- cGugGcgUCGCGGCCGGCcaccgccgcgcggGCCC-GGCg -3' miRNA: 3'- cUugCuuGGCGUUGGCCG-------------UGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 3833 | 0.68 | 0.792118 |
Target: 5'- aAGCGGccgGCCGCca-UGGCguaGCCCAGGUg -3' miRNA: 3'- cUUGCU---UGGCGuugGCCG---UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 113302 | 0.68 | 0.792118 |
Target: 5'- gGGACGuucCCcCGGCCGGCccgggggagAUCCAGGCc -3' miRNA: 3'- -CUUGCuu-GGcGUUGGCCG---------UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 103022 | 0.68 | 0.792118 |
Target: 5'- cGGCGGcgGCCGCcGCCGucuccaGCGCCUccaGGGCg -3' miRNA: 3'- cUUGCU--UGGCGuUGGC------CGUGGG---UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 23923 | 0.68 | 0.801073 |
Target: 5'- cGGGCGAggACC-UGGCCGGCGgCgGGGCc -3' miRNA: 3'- -CUUGCU--UGGcGUUGGCCGUgGgUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 23983 | 0.68 | 0.801073 |
Target: 5'- cGGCGGGCUGUccugccuGCUGGCGgCCCuGGCc -3' miRNA: 3'- cUUGCUUGGCGu------UGGCCGU-GGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 99945 | 0.68 | 0.801073 |
Target: 5'- uGGCGGGCCGCGcGCCGGgAgucgacCCCGcgcGGCg -3' miRNA: 3'- cUUGCUUGGCGU-UGGCCgU------GGGU---CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 112239 | 0.68 | 0.801073 |
Target: 5'- cAACG-GCCGC--CUGGCcaccagggugGCCCGGGCg -3' miRNA: 3'- cUUGCuUGGCGuuGGCCG----------UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 133447 | 0.68 | 0.801073 |
Target: 5'- -cGCGAcacGCUGCGACgGGU-CCUGGGCc -3' miRNA: 3'- cuUGCU---UGGCGUUGgCCGuGGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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