miRNA display CGI


Results 161 - 180 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 23983 0.68 0.801073
Target:  5'- cGGCGGGCUGUccugccuGCUGGCGgCCCuGGCc -3'
miRNA:   3'- cUUGCUUGGCGu------UGGCCGU-GGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 23923 0.68 0.801073
Target:  5'- cGGGCGAggACC-UGGCCGGCGgCgGGGCc -3'
miRNA:   3'- -CUUGCU--UGGcGUUGGCCGUgGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 93564 0.68 0.801073
Target:  5'- aGGACGAcaaCGCGACgccguuCGGCGgCCCGGGg -3'
miRNA:   3'- -CUUGCUug-GCGUUG------GCCGU-GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 132354 0.68 0.809878
Target:  5'- aGGugGGcCUGCGGCCacgcgGGCACCCGcaacgagucacGGCa -3'
miRNA:   3'- -CUugCUuGGCGUUGG-----CCGUGGGU-----------CCG- -5'
5556 3' -56.7 NC_001806.1 + 126860 0.68 0.809878
Target:  5'- uAACGuuCCGCcuggaggaCGGCGCCgGGGCu -3'
miRNA:   3'- cUUGCuuGGCGuug-----GCCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100097 0.68 0.809878
Target:  5'- aGggUcucCCGCGGCCGGCugaccGCCCGccuGGCg -3'
miRNA:   3'- -CuuGcuuGGCGUUGGCCG-----UGGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 83661 0.68 0.809878
Target:  5'- --cCGuACCGaCGGCgGgGUGCCCGGGCg -3'
miRNA:   3'- cuuGCuUGGC-GUUGgC-CGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 49267 0.68 0.809878
Target:  5'- cGACGAGCCGC--CCGuGCGCCgucgacgggaAGGCc -3'
miRNA:   3'- cUUGCUUGGCGuuGGC-CGUGGg---------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 37595 0.68 0.809878
Target:  5'- --uUGGcCCGCcagcACCGGgGCCCAGGg -3'
miRNA:   3'- cuuGCUuGGCGu---UGGCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 59340 0.67 0.818524
Target:  5'- uGAGCGGGgggaagguuggcCCGC-ACCGGCGCaugCAGGg -3'
miRNA:   3'- -CUUGCUU------------GGCGuUGGCCGUGg--GUCCg -5'
5556 3' -56.7 NC_001806.1 + 54772 0.67 0.818524
Target:  5'- uGAugGuuGGCCGCGGCa-GCACCaGGGCc -3'
miRNA:   3'- -CUugC--UUGGCGUUGgcCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 2008 0.67 0.818524
Target:  5'- aGGCGugcuGCCGCGacACCGcGgGCCCGucGGCg -3'
miRNA:   3'- cUUGCu---UGGCGU--UGGC-CgUGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 94846 0.67 0.818524
Target:  5'- aGAACGAcucgguCCGCAaggagGCCGaCGCCCugcuggAGGCg -3'
miRNA:   3'- -CUUGCUu-----GGCGU-----UGGCcGUGGG------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 75483 0.67 0.818524
Target:  5'- -cGCGAcGCgCGCGaccACCGGCGCgCGGGa -3'
miRNA:   3'- cuUGCU-UG-GCGU---UGGCCGUGgGUCCg -5'
5556 3' -56.7 NC_001806.1 + 70647 0.67 0.818524
Target:  5'- uGGgGGugUGCGacgaGCUGGCgGCCCAGGUg -3'
miRNA:   3'- cUUgCUugGCGU----UGGCCG-UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 57040 0.67 0.818524
Target:  5'- --cCGGGcCCGgGGCCGGgGCCCccGGCu -3'
miRNA:   3'- cuuGCUU-GGCgUUGGCCgUGGGu-CCG- -5'
5556 3' -56.7 NC_001806.1 + 23086 0.67 0.818524
Target:  5'- -uGCGcGCCGUGagccuggucGCCGGgGCCCuGGGCc -3'
miRNA:   3'- cuUGCuUGGCGU---------UGGCCgUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 19202 0.67 0.818524
Target:  5'- --gUGAGCCGCA---GGUuuACCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCGUuggCCG--UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 4124 0.67 0.818524
Target:  5'- cGGGCGccccccagaGGCCcggGCGGCUGuCGCCCAGGCc -3'
miRNA:   3'- -CUUGC---------UUGG---CGUUGGCcGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100912 0.67 0.818524
Target:  5'- -cGCGAACagcguGCGAUCGGgGugcgccucgcccCCCAGGCg -3'
miRNA:   3'- cuUGCUUGg----CGUUGGCCgU------------GGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.