miRNA display CGI


Results 101 - 120 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 132354 0.68 0.809878
Target:  5'- aGGugGGcCUGCGGCCacgcgGGCACCCGcaacgagucacGGCa -3'
miRNA:   3'- -CUugCUuGGCGUUGG-----CCGUGGGU-----------CCG- -5'
5556 3' -56.7 NC_001806.1 + 100097 0.68 0.809878
Target:  5'- aGggUcucCCGCGGCCGGCugaccGCCCGccuGGCg -3'
miRNA:   3'- -CuuGcuuGGCGUUGGCCG-----UGGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 23923 0.68 0.801073
Target:  5'- cGGGCGAggACC-UGGCCGGCGgCgGGGCc -3'
miRNA:   3'- -CUUGCU--UGGcGUUGGCCGUgGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 93564 0.68 0.801073
Target:  5'- aGGACGAcaaCGCGACgccguuCGGCGgCCCGGGg -3'
miRNA:   3'- -CUUGCUug-GCGUUG------GCCGU-GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 133447 0.68 0.801073
Target:  5'- -cGCGAcacGCUGCGACgGGU-CCUGGGCc -3'
miRNA:   3'- cuUGCU---UGGCGUUGgCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 23983 0.68 0.801073
Target:  5'- cGGCGGGCUGUccugccuGCUGGCGgCCCuGGCc -3'
miRNA:   3'- cUUGCUUGGCGu------UGGCCGU-GGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 4368 0.68 0.801073
Target:  5'- -cGCGGagGCCGCGgggguccucGCCGcCGCCCGGGg -3'
miRNA:   3'- cuUGCU--UGGCGU---------UGGCcGUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 99945 0.68 0.801073
Target:  5'- uGGCGGGCCGCGcGCCGGgAgucgacCCCGcgcGGCg -3'
miRNA:   3'- cUUGCUUGGCGU-UGGCCgU------GGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 112239 0.68 0.801073
Target:  5'- cAACG-GCCGC--CUGGCcaccagggugGCCCGGGCg -3'
miRNA:   3'- cUUGCuUGGCGuuGGCCG----------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 135590 0.68 0.801073
Target:  5'- ----cGGCCGCGcgcuGCUGGCGCuCCAGGg -3'
miRNA:   3'- cuugcUUGGCGU----UGGCCGUG-GGUCCg -5'
5556 3' -56.7 NC_001806.1 + 3833 0.68 0.792118
Target:  5'- aAGCGGccgGCCGCca-UGGCguaGCCCAGGUg -3'
miRNA:   3'- cUUGCU---UGGCGuugGCCG---UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 103022 0.68 0.792118
Target:  5'- cGGCGGcgGCCGCcGCCGucuccaGCGCCUccaGGGCg -3'
miRNA:   3'- cUUGCU--UGGCGuUGGC------CGUGGG---UCCG- -5'
5556 3' -56.7 NC_001806.1 + 113302 0.68 0.792118
Target:  5'- gGGACGuucCCcCGGCCGGCccgggggagAUCCAGGCc -3'
miRNA:   3'- -CUUGCuu-GGcGUUGGCCG---------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 4314 0.68 0.791214
Target:  5'- cGugGcgUCGCGGCCGGCcaccgccgcgcggGCCC-GGCg -3'
miRNA:   3'- cUugCuuGGCGUUGGCCG-------------UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 44419 0.68 0.789403
Target:  5'- uGAGCGAcgACCGCcccaacacauagcaGGCCGcGgGCCC-GGCg -3'
miRNA:   3'- -CUUGCU--UGGCG--------------UUGGC-CgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 108161 0.68 0.78302
Target:  5'- --cCGuGGCCGCAAUU-GCGCCCGGGUu -3'
miRNA:   3'- cuuGC-UUGGCGUUGGcCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 33119 0.68 0.78302
Target:  5'- cGGACGGggcccggaccGCCGCggUCGGgGgccccucguCCCGGGCc -3'
miRNA:   3'- -CUUGCU----------UGGCGuuGGCCgU---------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 73348 0.68 0.78302
Target:  5'- -uACGGucGCCGUAuCCGGCcucuCCgGGGCu -3'
miRNA:   3'- cuUGCU--UGGCGUuGGCCGu---GGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 109239 0.68 0.78302
Target:  5'- cGGGCGGGgCGgAAUCcugGGC-CCCGGGCa -3'
miRNA:   3'- -CUUGCUUgGCgUUGG---CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 40384 0.68 0.780264
Target:  5'- cGACGGucccccCCGCAuCCGGCuguacguuguaccgACCCAGGa -3'
miRNA:   3'- cUUGCUu-----GGCGUuGGCCG--------------UGGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.