miRNA display CGI


Results 81 - 100 of 265 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 26994 0.71 0.63652
Target:  5'- cGAGCGGGCCGaccgggcucgguuCCGGCGCCgGguGGCg -3'
miRNA:   3'- -CUUGCUUGGCguu----------GGCCGUGGgU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 27050 0.69 0.754958
Target:  5'- --uCGGGCCGUGcCUGGgGCCCgAGGCc -3'
miRNA:   3'- cuuGCUUGGCGUuGGCCgUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 28000 0.71 0.625332
Target:  5'- gGAGCGAGaCGCAGCagccaGGCagACUCGGGCc -3'
miRNA:   3'- -CUUGCUUgGCGUUGg----CCG--UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 29957 0.67 0.859092
Target:  5'- -cGCGAGCCGC----GGCGCCgCGGGg -3'
miRNA:   3'- cuUGCUUGGCGuuggCCGUGG-GUCCg -5'
5556 3' -56.7 NC_001806.1 + 30248 0.72 0.564668
Target:  5'- -uGCGAgcGCCGCcuCCGGgGCCC-GGCc -3'
miRNA:   3'- cuUGCU--UGGCGuuGGCCgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 31102 0.66 0.887271
Target:  5'- -uGCGGGCCGCGguccccggcuggaGCCGccGCACCCu-GCu -3'
miRNA:   3'- cuUGCUUGGCGU-------------UGGC--CGUGGGucCG- -5'
5556 3' -56.7 NC_001806.1 + 31231 0.66 0.881059
Target:  5'- gGAACauGCUGUucGACCagGGCACCCuaguGGGCg -3'
miRNA:   3'- -CUUGcuUGGCG--UUGG--CCGUGGG----UCCG- -5'
5556 3' -56.7 NC_001806.1 + 31270 0.69 0.716086
Target:  5'- uGGACuu-CCGCAGCCugcggucucGGCACCCGuGGUc -3'
miRNA:   3'- -CUUGcuuGGCGUUGG---------CCGUGGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 32961 0.69 0.749222
Target:  5'- --cCGGGCCGgGGCCccuuggguccgccggGGC-CCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCgUUGG---------------CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 33119 0.68 0.78302
Target:  5'- cGGACGGggcccggaccGCCGCggUCGGgGgccccucguCCCGGGCc -3'
miRNA:   3'- -CUUGCU----------UGGCGuuGGCCgU---------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 33299 0.67 0.827002
Target:  5'- aGACcAGCgGcCGGCCGGCGCUUAGGg -3'
miRNA:   3'- cUUGcUUGgC-GUUGGCCGUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 33591 0.66 0.88795
Target:  5'- -cGCGGGCaCGCGcgcccuuaauggACCGGCG-CgGGGCg -3'
miRNA:   3'- cuUGCUUG-GCGU------------UGGCCGUgGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 33978 0.67 0.859092
Target:  5'- -uGCGGGCCGgGggucGCCGGgGCagGGGCg -3'
miRNA:   3'- cuUGCUUGGCgU----UGGCCgUGggUCCG- -5'
5556 3' -56.7 NC_001806.1 + 34552 0.72 0.564668
Target:  5'- ---aGAGCCGCGAcCCGGCcGCCgGGGa -3'
miRNA:   3'- cuugCUUGGCGUU-GGCCG-UGGgUCCg -5'
5556 3' -56.7 NC_001806.1 + 35548 0.75 0.396852
Target:  5'- cAGCGAGCCGC--UCGGCGCgCCcGGCg -3'
miRNA:   3'- cUUGCUUGGCGuuGGCCGUG-GGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 35580 0.69 0.754958
Target:  5'- cGAACGacGugCGCAgcGCCGGaguuuugGCCCuGGCg -3'
miRNA:   3'- -CUUGC--UugGCGU--UGGCCg------UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 36392 0.68 0.773788
Target:  5'- aAACGGccgcgcacACCGCAGCC-GCACCCcGcGCu -3'
miRNA:   3'- cUUGCU--------UGGCGUUGGcCGUGGGuC-CG- -5'
5556 3' -56.7 NC_001806.1 + 37595 0.68 0.809878
Target:  5'- --uUGGcCCGCcagcACCGGgGCCCAGGg -3'
miRNA:   3'- cuuGCUuGGCGu---UGGCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 37771 0.67 0.859092
Target:  5'- cGGGCGccuuUCGCu-CCGGgGCCgGGGCg -3'
miRNA:   3'- -CUUGCuu--GGCGuuGGCCgUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 38798 0.67 0.835305
Target:  5'- --cCGuuCCGCuuccGCgGGgACCCGGGCg -3'
miRNA:   3'- cuuGCuuGGCGu---UGgCCgUGGGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.