Results 101 - 120 of 265 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 40384 | 0.68 | 0.780264 |
Target: 5'- cGACGGucccccCCGCAuCCGGCuguacguuguaccgACCCAGGa -3' miRNA: 3'- cUUGCUu-----GGCGUuGGCCG--------------UGGGUCCg -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 41196 | 0.73 | 0.52898 |
Target: 5'- gGAGCuGAACCGCAGCCaGaGCcccgcgccuaaagugGCCCAGGg -3' miRNA: 3'- -CUUG-CUUGGCGUUGG-C-CG---------------UGGGUCCg -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 41344 | 0.71 | 0.625332 |
Target: 5'- -cACGuacauCUGCcccCCGGCAUCCAGGCc -3' miRNA: 3'- cuUGCuu---GGCGuu-GGCCGUGGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 41486 | 0.7 | 0.665968 |
Target: 5'- cGAGCGucCCGCGuuauGCgGGCccagucguCCCAGGCc -3' miRNA: 3'- -CUUGCuuGGCGU----UGgCCGu-------GGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 42190 | 0.68 | 0.764431 |
Target: 5'- cGGACGucGGCCGCAAUaCGGCGCuCCAcGUa -3' miRNA: 3'- -CUUGC--UUGGCGUUG-GCCGUG-GGUcCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 43296 | 0.69 | 0.7357 |
Target: 5'- aGGCgGAGCCGCGGCUgcaGGagGCCCuGGCg -3' miRNA: 3'- cUUG-CUUGGCGUUGG---CCg-UGGGuCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 44274 | 0.66 | 0.881059 |
Target: 5'- aGAGCGuccgcccCCGCAACCaggagcugGGCgACCUuGGCg -3' miRNA: 3'- -CUUGCuu-----GGCGUUGG--------CCG-UGGGuCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 44419 | 0.68 | 0.789403 |
Target: 5'- uGAGCGAcgACCGCcccaacacauagcaGGCCGcGgGCCC-GGCg -3' miRNA: 3'- -CUUGCU--UGGCG--------------UUGGC-CgUGGGuCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 46197 | 0.67 | 0.851357 |
Target: 5'- cAGCGggUgGCGACUaaGGCcCCCGcGGCc -3' miRNA: 3'- cUUGCuuGgCGUUGG--CCGuGGGU-CCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 47683 | 0.66 | 0.893962 |
Target: 5'- -uGCGcGCCaGCGuCCGGCAgcugcacCgCCAGGCg -3' miRNA: 3'- cuUGCuUGG-CGUuGGCCGU-------G-GGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 49267 | 0.68 | 0.809878 |
Target: 5'- cGACGAGCCGC--CCGuGCGCCgucgacgggaAGGCc -3' miRNA: 3'- cUUGCUUGGCGuuGGC-CGUGGg---------UCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 49639 | 0.67 | 0.835305 |
Target: 5'- gGGACGcguGCCGgGcCCGGaGCuCCGGGCg -3' miRNA: 3'- -CUUGCu--UGGCgUuGGCCgUG-GGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 49907 | 0.71 | 0.59488 |
Target: 5'- uGACGGAUCGUcgaacaaaAACCaGCcccGCCCAGGCg -3' miRNA: 3'- cUUGCUUGGCG--------UUGGcCG---UGGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 50534 | 0.74 | 0.43148 |
Target: 5'- uGGGCGAcACCGCAgcgcGCCGGCugCUcgccaacagcGGGCu -3' miRNA: 3'- -CUUGCU-UGGCGU----UGGCCGugGG----------UCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 50621 | 0.69 | 0.745378 |
Target: 5'- uGGCG-ACCGUGACCuuaaaguaCGCCCGGGCg -3' miRNA: 3'- cUUGCuUGGCGUUGGcc------GUGGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 51553 | 0.66 | 0.881059 |
Target: 5'- -uACGAGuacauCCGgcacuacgcuuCGGCCGcCACCCAGGCg -3' miRNA: 3'- cuUGCUU-----GGC-----------GUUGGCcGUGGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 51602 | 0.67 | 0.859092 |
Target: 5'- aGGugGAGCUGC--CCGGCGgCCAGu- -3' miRNA: 3'- -CUugCUUGGCGuuGGCCGUgGGUCcg -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 54104 | 0.69 | 0.7357 |
Target: 5'- gGAGcCGAGcCCGCAuggggggugucCCGGgGCCCAGGg -3' miRNA: 3'- -CUU-GCUU-GGCGUu----------GGCCgUGGGUCCg -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 54611 | 0.71 | 0.625332 |
Target: 5'- gGAcCGGACCGUAGCCaGC-CCgGGGUg -3' miRNA: 3'- -CUuGCUUGGCGUUGGcCGuGGgUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 54772 | 0.67 | 0.818524 |
Target: 5'- uGAugGuuGGCCGCGGCa-GCACCaGGGCc -3' miRNA: 3'- -CUugC--UUGGCGUUGgcCGUGGgUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home