miRNA display CGI


Results 121 - 140 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 55139 0.76 0.364064
Target:  5'- -uGCGGGCUGUccauCCGGC-CCCAGGCc -3'
miRNA:   3'- cuUGCUUGGCGuu--GGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 55225 0.67 0.842622
Target:  5'- cAGCGGcCCGgugacagaauaCAACggaggguCGGCGCCCGGGCc -3'
miRNA:   3'- cUUGCUuGGC-----------GUUG-------GCCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 56517 0.67 0.843426
Target:  5'- cAGCGGcaggcCCGgGcCCGGCGuucCCCGGGCa -3'
miRNA:   3'- cUUGCUu----GGCgUuGGCCGU---GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 56838 0.66 0.881059
Target:  5'- cAACaccGCCGCGGCCagGGCGgCCGcGGCg -3'
miRNA:   3'- cUUGcu-UGGCGUUGG--CCGUgGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 56986 0.75 0.422657
Target:  5'- cGGCGAgcaccaggagcGCCGCAuaGgCGGCGCCCAGuGCc -3'
miRNA:   3'- cUUGCU-----------UGGCGU--UgGCCGUGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 57040 0.67 0.818524
Target:  5'- --cCGGGcCCGgGGCCGGgGCCCccGGCu -3'
miRNA:   3'- cuuGCUU-GGCgUUGGCCgUGGGu-CCG- -5'
5556 3' -56.7 NC_001806.1 + 57093 0.71 0.59488
Target:  5'- aGAACaaGGGCCGCuccACCGGCcgccaguuugAgCCAGGCg -3'
miRNA:   3'- -CUUG--CUUGGCGu--UGGCCG----------UgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 59340 0.67 0.818524
Target:  5'- uGAGCGGGgggaagguuggcCCGC-ACCGGCGCaugCAGGg -3'
miRNA:   3'- -CUUGCUU------------GGCGuUGGCCGUGg--GUCCg -5'
5556 3' -56.7 NC_001806.1 + 60595 0.68 0.773788
Target:  5'- gGGACGuuACCGgGGgccaccCCGGC-CCCAGGUc -3'
miRNA:   3'- -CUUGCu-UGGCgUU------GGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 63164 0.69 0.7357
Target:  5'- -cAUGGACCGCAgguugucguuGCCGcggguGCACUgGGGCg -3'
miRNA:   3'- cuUGCUUGGCGU----------UGGC-----CGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 64409 0.67 0.858327
Target:  5'- --uUGGAUCGCAGCCacuccucaaaggaGGCcuCCCGGGUc -3'
miRNA:   3'- cuuGCUUGGCGUUGG-------------CCGu-GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 64883 0.68 0.773788
Target:  5'- cGGCGGgaucgGCCGCAagaccagcGCCGGC-CUCuGGCg -3'
miRNA:   3'- cUUGCU-----UGGCGU--------UGGCCGuGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 64944 0.72 0.584773
Target:  5'- uGAGgGAccACCGgcgUCGGCGCCCGGGCc -3'
miRNA:   3'- -CUUgCU--UGGCguuGGCCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 65446 0.74 0.466884
Target:  5'- gGAGCGGgggauGCCGCGGCCcccggguccugggGGCGCCCGcGCa -3'
miRNA:   3'- -CUUGCU-----UGGCGUUGG-------------CCGUGGGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 66433 0.69 0.725933
Target:  5'- gGGGCGcccCCGCAGguCCGGCugCCAgcGGUa -3'
miRNA:   3'- -CUUGCuu-GGCGUU--GGCCGugGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 66832 0.7 0.655829
Target:  5'- cGggUGGccggugugcGCCGCcucCUGGgGCCCGGGCa -3'
miRNA:   3'- -CuuGCU---------UGGCGuu-GGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 67159 0.73 0.515322
Target:  5'- aGGGCGGucGCCuccauCAGCUGGC-CCCAGGCc -3'
miRNA:   3'- -CUUGCU--UGGc----GUUGGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 68174 0.67 0.851357
Target:  5'- cGGACGGACC-UAugCaGCGCCUAuuGGCg -3'
miRNA:   3'- -CUUGCUUGGcGUugGcCGUGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 69248 0.69 0.745378
Target:  5'- gGAGC-AGCC-CuccGCCGGCGCCCAGcaGCg -3'
miRNA:   3'- -CUUGcUUGGcGu--UGGCCGUGGGUC--CG- -5'
5556 3' -56.7 NC_001806.1 + 69685 0.72 0.54475
Target:  5'- uGGCGAGCCuGCGGCgGGCGCUCGuGGg -3'
miRNA:   3'- cUUGCUUGG-CGUUGgCCGUGGGU-CCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.