miRNA display CGI


Results 141 - 160 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 70647 0.67 0.818524
Target:  5'- uGGgGGugUGCGacgaGCUGGCgGCCCAGGUg -3'
miRNA:   3'- cUUgCUugGCGU----UGGCCG-UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 70932 0.7 0.706168
Target:  5'- gGAGCGcGCCGUggUCguGGCGCCCuuGGUc -3'
miRNA:   3'- -CUUGCuUGGCGuuGG--CCGUGGGu-CCG- -5'
5556 3' -56.7 NC_001806.1 + 71061 0.67 0.843426
Target:  5'- -uACGAGCCGUcgcGACCuaGGgGCCUGGGg -3'
miRNA:   3'- cuUGCUUGGCG---UUGG--CCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 71936 0.7 0.665968
Target:  5'- gGGGCGAguggacGCgCGCGACCGcGgGCCCuGGGCc -3'
miRNA:   3'- -CUUGCU------UG-GCGUUGGC-CgUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 73108 0.67 0.835305
Target:  5'- --cCGAcccgGCCGgGccGCCGGuCGCCgAGGCg -3'
miRNA:   3'- cuuGCU----UGGCgU--UGGCC-GUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 73195 0.69 0.7357
Target:  5'- aGACucGCCGCucgcCCGaGCcCCCGGGCg -3'
miRNA:   3'- cUUGcuUGGCGuu--GGC-CGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 73348 0.68 0.78302
Target:  5'- -uACGGucGCCGUAuCCGGCcucuCCgGGGCu -3'
miRNA:   3'- cuUGCU--UGGCGUuGGCCGu---GGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 75229 0.67 0.858327
Target:  5'- cGGGCGcACCGCGucCUGGUcgacgcggugacgGCCCuGGGCg -3'
miRNA:   3'- -CUUGCuUGGCGUu-GGCCG-------------UGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 75483 0.67 0.818524
Target:  5'- -cGCGAcGCgCGCGaccACCGGCGCgCGGGa -3'
miRNA:   3'- cuUGCU-UG-GCGU---UGGCCGUGgGUCCg -5'
5556 3' -56.7 NC_001806.1 + 76069 0.69 0.745378
Target:  5'- cGGGgGGGCUGCugGAgCGG-GCCCAGGCg -3'
miRNA:   3'- -CUUgCUUGGCG--UUgGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 76310 0.67 0.833659
Target:  5'- -cGCGGugCGCAACgacccggCGGCGgccgccgagcuugUCCGGGCa -3'
miRNA:   3'- cuUGCUugGCGUUG-------GCCGU-------------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 77128 0.69 0.7357
Target:  5'- cGAGCGGGCCGgGGCCguGGaggaGCUCGGGg -3'
miRNA:   3'- -CUUGCUUGGCgUUGG--CCg---UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 77422 0.68 0.764431
Target:  5'- cGugGAucuUCGCGcccuagacGCCcGCGCCCGGGCg -3'
miRNA:   3'- cUugCUu--GGCGU--------UGGcCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 77770 0.66 0.881059
Target:  5'- cAACcGGCUuCAGCUGGCccucagcgacGCCCAGGCc -3'
miRNA:   3'- cUUGcUUGGcGUUGGCCG----------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 78296 0.67 0.835305
Target:  5'- --cCGaAACCGaccccCUGGCGCCCuGGCg -3'
miRNA:   3'- cuuGC-UUGGCguu--GGCCGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 78345 0.72 0.553687
Target:  5'- cGAGCGcggcGCCGC-GCUGGgaaagcugaguccCGCCCAGGCg -3'
miRNA:   3'- -CUUGCu---UGGCGuUGGCC-------------GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 79534 0.79 0.229245
Target:  5'- --cCGAAagcaCGCGGCCGGCGCCCguGGGCc -3'
miRNA:   3'- cuuGCUUg---GCGUUGGCCGUGGG--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 79697 0.67 0.842622
Target:  5'- --cCGGGCaCGCuccCUGGCgcgcgccACCCAGGCu -3'
miRNA:   3'- cuuGCUUG-GCGuu-GGCCG-------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 79931 0.67 0.827002
Target:  5'- ------gUCGCAACCGGCacgguuuuGCCCGGGg -3'
miRNA:   3'- cuugcuuGGCGUUGGCCG--------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 80020 0.74 0.458578
Target:  5'- aGGCGGGCCGCAG-CGGCGCCUuacGCg -3'
miRNA:   3'- cUUGCUUGGCGUUgGCCGUGGGuc-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.