miRNA display CGI


Results 61 - 80 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 105430 0.71 0.645671
Target:  5'- cGACGAuCUGCGACCuGGCgcgcacguuuGCCCGGGa -3'
miRNA:   3'- cUUGCUuGGCGUUGG-CCG----------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 105339 0.71 0.645671
Target:  5'- -uACGAccaAUCGCccGCCGGCugCCGGGa -3'
miRNA:   3'- cuUGCU---UGGCGu-UGGCCGugGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 105144 0.66 0.866624
Target:  5'- gGGGCGGccguGCCGCcccaggguGCCGaGC-CCCAGaGCa -3'
miRNA:   3'- -CUUGCU----UGGCGu-------UGGC-CGuGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 103802 0.72 0.581748
Target:  5'- cGGGCGGcgccGCCGCGgcggcgacgggcucGCUGGguCCUAGGCu -3'
miRNA:   3'- -CUUGCU----UGGCGU--------------UGGCCguGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 103720 0.7 0.67608
Target:  5'- cGGCGggUgGUAACUGGCgggccgcugACUCGGGCg -3'
miRNA:   3'- cUUGCuuGgCGUUGGCCG---------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 103462 0.68 0.764431
Target:  5'- cAGCGGACCgGCGuCUGGCgugggaaaACCCGGGg -3'
miRNA:   3'- cUUGCUUGG-CGUuGGCCG--------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 103022 0.68 0.792118
Target:  5'- cGGCGGcgGCCGCcGCCGucuccaGCGCCUccaGGGCg -3'
miRNA:   3'- cUUGCU--UGGCGuUGGC------CGUGGG---UCCG- -5'
5556 3' -56.7 NC_001806.1 + 102512 0.79 0.246408
Target:  5'- --cCGAucACCGCGGCCaGGCACgCCAGGUa -3'
miRNA:   3'- cuuGCU--UGGCGUUGG-CCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 102482 0.69 0.754958
Target:  5'- uAGCGGuACUGUGGCCGGCcGCCCucGGUc -3'
miRNA:   3'- cUUGCU-UGGCGUUGGCCG-UGGGu-CCG- -5'
5556 3' -56.7 NC_001806.1 + 101897 0.7 0.696189
Target:  5'- -cGCGucGACC-CGACCGGCcgccccGCCUGGGCg -3'
miRNA:   3'- cuUGC--UUGGcGUUGGCCG------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100912 0.67 0.818524
Target:  5'- -cGCGAACagcguGCGAUCGGgGugcgccucgcccCCCAGGCg -3'
miRNA:   3'- cuUGCUUGg----CGUUGGCCgU------------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100721 0.67 0.834483
Target:  5'- --gUGggUCaGCGccuccacGCCgGGCGCCCAGGUg -3'
miRNA:   3'- cuuGCuuGG-CGU-------UGG-CCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100633 0.68 0.764431
Target:  5'- cGGCGAucccggccugccGCCGCcGCuCGGC-CaCCAGGCu -3'
miRNA:   3'- cUUGCU------------UGGCGuUG-GCCGuG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100473 0.66 0.873948
Target:  5'- cGGACGAuuggGC-ACCGGuCACCCugcGGCg -3'
miRNA:   3'- -CUUGCUugg-CGuUGGCC-GUGGGu--CCG- -5'
5556 3' -56.7 NC_001806.1 + 100097 0.68 0.809878
Target:  5'- aGggUcucCCGCGGCCGGCugaccGCCCGccuGGCg -3'
miRNA:   3'- -CuuGcuuGGCGUUGGCCG-----UGGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 99945 0.68 0.801073
Target:  5'- uGGCGGGCCGCGcGCCGGgAgucgacCCCGcgcGGCg -3'
miRNA:   3'- cUUGCUUGGCGU-UGGCCgU------GGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 97780 0.66 0.883842
Target:  5'- cGAGCaGAGCCGCAagcccccaaacccacGCCcccGcCGCCCGGGg -3'
miRNA:   3'- -CUUG-CUUGGCGU---------------UGGc--C-GUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 97096 0.7 0.655829
Target:  5'- -cACGAGCCGgGGCUGGCACaCCAc-- -3'
miRNA:   3'- cuUGCUUGGCgUUGGCCGUG-GGUccg -5'
5556 3' -56.7 NC_001806.1 + 96623 0.7 0.665968
Target:  5'- cGGCGAcaaCGCGACCGuCGCCgCGGGCc -3'
miRNA:   3'- cUUGCUug-GCGUUGGCcGUGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 96486 0.74 0.467812
Target:  5'- ---gGggUCGCGGCCGcG-ACCCAGGCg -3'
miRNA:   3'- cuugCuuGGCGUUGGC-CgUGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.