miRNA display CGI


Results 81 - 100 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 95708 0.66 0.894619
Target:  5'- cGAC-AACCGC--UCGGCG-CCGGGCg -3'
miRNA:   3'- cUUGcUUGGCGuuGGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 95413 0.74 0.477139
Target:  5'- aGGACGAagACCGUcGCCGcGgGCCCGGGg -3'
miRNA:   3'- -CUUGCU--UGGCGuUGGC-CgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 95045 0.7 0.686157
Target:  5'- -cGCGGugGCCGUggAACUGGCGCUguuCGGGCg -3'
miRNA:   3'- cuUGCU--UGGCG--UUGGCCGUGG---GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 94846 0.67 0.818524
Target:  5'- aGAACGAcucgguCCGCAaggagGCCGaCGCCCugcuggAGGCg -3'
miRNA:   3'- -CUUGCUu-----GGCGU-----UGGCcGUGGG------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 94716 0.71 0.624315
Target:  5'- cAACGAGCUGCGG-CGGUACCUgccccacgccgccGGGCu -3'
miRNA:   3'- cUUGCUUGGCGUUgGCCGUGGG-------------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 93604 0.66 0.881059
Target:  5'- ---gGGACCgGCAuuuGCCGGCcGCaaaCGGGCg -3'
miRNA:   3'- cuugCUUGG-CGU---UGGCCG-UGg--GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 93564 0.68 0.801073
Target:  5'- aGGACGAcaaCGCGACgccguuCGGCGgCCCGGGg -3'
miRNA:   3'- -CUUGCUug-GCGUUG------GCCGU-GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 92958 0.71 0.635503
Target:  5'- uGAugGAcGCCGUGGaCGcGCAUCCGGGCg -3'
miRNA:   3'- -CUugCU-UGGCGUUgGC-CGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 92927 0.7 0.67608
Target:  5'- gGGGCGGGCCuggaGGCCGGgGCCCGcGCg -3'
miRNA:   3'- -CUUGCUUGGcg--UUGGCCgUGGGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 91378 0.69 0.754958
Target:  5'- --gUGGACCGCGagggacACgUGGUGCCCGGGUu -3'
miRNA:   3'- cuuGCUUGGCGU------UG-GCCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 91169 0.66 0.881059
Target:  5'- aGGACacGGCCGCGGCCcGCGCCaacgccgucgGGGCg -3'
miRNA:   3'- -CUUGc-UUGGCGUUGGcCGUGGg---------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 90401 0.71 0.622281
Target:  5'- -uACGucuuucACgGCGGCCGGCaccuggaccccagcACCCAGGCc -3'
miRNA:   3'- cuUGCu-----UGgCGUUGGCCG--------------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 89898 0.66 0.881059
Target:  5'- gGGACc--CCGCGuuGCCGGCcGCCgGGGUu -3'
miRNA:   3'- -CUUGcuuGGCGU--UGGCCG-UGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 89787 0.67 0.859092
Target:  5'- gGGAgGGGCUgggGCgGACCGGCAcgccCCCAGGa -3'
miRNA:   3'- -CUUgCUUGG---CG-UUGGCCGU----GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 89524 0.8 0.207944
Target:  5'- cGGCGAGCUGCuGCgCGGCGCCCcGGCc -3'
miRNA:   3'- cUUGCUUGGCGuUG-GCCGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 89442 0.71 0.59488
Target:  5'- gGGugGGAUgGCAaaauuACCGGaCcCCCAGGCu -3'
miRNA:   3'- -CUugCUUGgCGU-----UGGCC-GuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 87395 0.78 0.283913
Target:  5'- --cCGGGCUGCGGCCGGaCGCUUGGGCg -3'
miRNA:   3'- cuuGCUUGGCGUUGGCC-GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 85697 0.73 0.515322
Target:  5'- cGACGAguuuccuccGCCGUAgcGCCGGCACCCAccGCc -3'
miRNA:   3'- cUUGCU---------UGGCGU--UGGCCGUGGGUc-CG- -5'
5556 3' -56.7 NC_001806.1 + 84868 0.67 0.843426
Target:  5'- -cGCGcuccuCUGCGGCCGGCGggacUCUGGGCg -3'
miRNA:   3'- cuUGCuu---GGCGUUGGCCGU----GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 83991 0.66 0.881059
Target:  5'- -cGCGAGCCGgAggagucGCCGGaUACgUGGGCg -3'
miRNA:   3'- cuUGCUUGGCgU------UGGCC-GUGgGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.