Results 121 - 140 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 73108 | 0.67 | 0.835305 |
Target: 5'- --cCGAcccgGCCGgGccGCCGGuCGCCgAGGCg -3' miRNA: 3'- cuuGCU----UGGCgU--UGGCC-GUGGgUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 71936 | 0.7 | 0.665968 |
Target: 5'- gGGGCGAguggacGCgCGCGACCGcGgGCCCuGGGCc -3' miRNA: 3'- -CUUGCU------UG-GCGUUGGC-CgUGGG-UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 71061 | 0.67 | 0.843426 |
Target: 5'- -uACGAGCCGUcgcGACCuaGGgGCCUGGGg -3' miRNA: 3'- cuUGCUUGGCG---UUGG--CCgUGGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 70932 | 0.7 | 0.706168 |
Target: 5'- gGAGCGcGCCGUggUCguGGCGCCCuuGGUc -3' miRNA: 3'- -CUUGCuUGGCGuuGG--CCGUGGGu-CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 70647 | 0.67 | 0.818524 |
Target: 5'- uGGgGGugUGCGacgaGCUGGCgGCCCAGGUg -3' miRNA: 3'- cUUgCUugGCGU----UGGCCG-UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 69685 | 0.72 | 0.54475 |
Target: 5'- uGGCGAGCCuGCGGCgGGCGCUCGuGGg -3' miRNA: 3'- cUUGCUUGG-CGUUGgCCGUGGGU-CCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 69248 | 0.69 | 0.745378 |
Target: 5'- gGAGC-AGCC-CuccGCCGGCGCCCAGcaGCg -3' miRNA: 3'- -CUUGcUUGGcGu--UGGCCGUGGGUC--CG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 68174 | 0.67 | 0.851357 |
Target: 5'- cGGACGGACC-UAugCaGCGCCUAuuGGCg -3' miRNA: 3'- -CUUGCUUGGcGUugGcCGUGGGU--CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 67159 | 0.73 | 0.515322 |
Target: 5'- aGGGCGGucGCCuccauCAGCUGGC-CCCAGGCc -3' miRNA: 3'- -CUUGCU--UGGc----GUUGGCCGuGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 66832 | 0.7 | 0.655829 |
Target: 5'- cGggUGGccggugugcGCCGCcucCUGGgGCCCGGGCa -3' miRNA: 3'- -CuuGCU---------UGGCGuu-GGCCgUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 66433 | 0.69 | 0.725933 |
Target: 5'- gGGGCGcccCCGCAGguCCGGCugCCAgcGGUa -3' miRNA: 3'- -CUUGCuu-GGCGUU--GGCCGugGGU--CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 65446 | 0.74 | 0.466884 |
Target: 5'- gGAGCGGgggauGCCGCGGCCcccggguccugggGGCGCCCGcGCa -3' miRNA: 3'- -CUUGCU-----UGGCGUUGG-------------CCGUGGGUcCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 64944 | 0.72 | 0.584773 |
Target: 5'- uGAGgGAccACCGgcgUCGGCGCCCGGGCc -3' miRNA: 3'- -CUUgCU--UGGCguuGGCCGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 64883 | 0.68 | 0.773788 |
Target: 5'- cGGCGGgaucgGCCGCAagaccagcGCCGGC-CUCuGGCg -3' miRNA: 3'- cUUGCU-----UGGCGU--------UGGCCGuGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 64409 | 0.67 | 0.858327 |
Target: 5'- --uUGGAUCGCAGCCacuccucaaaggaGGCcuCCCGGGUc -3' miRNA: 3'- cuuGCUUGGCGUUGG-------------CCGu-GGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 63164 | 0.69 | 0.7357 |
Target: 5'- -cAUGGACCGCAgguugucguuGCCGcggguGCACUgGGGCg -3' miRNA: 3'- cuUGCUUGGCGU----------UGGC-----CGUGGgUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 60595 | 0.68 | 0.773788 |
Target: 5'- gGGACGuuACCGgGGgccaccCCGGC-CCCAGGUc -3' miRNA: 3'- -CUUGCu-UGGCgUU------GGCCGuGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 59340 | 0.67 | 0.818524 |
Target: 5'- uGAGCGGGgggaagguuggcCCGC-ACCGGCGCaugCAGGg -3' miRNA: 3'- -CUUGCUU------------GGCGuUGGCCGUGg--GUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 57093 | 0.71 | 0.59488 |
Target: 5'- aGAACaaGGGCCGCuccACCGGCcgccaguuugAgCCAGGCg -3' miRNA: 3'- -CUUG--CUUGGCGu--UGGCCG----------UgGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 57040 | 0.67 | 0.818524 |
Target: 5'- --cCGGGcCCGgGGCCGGgGCCCccGGCu -3' miRNA: 3'- cuuGCUU-GGCgUUGGCCgUGGGu-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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