miRNA display CGI


Results 141 - 160 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 56986 0.75 0.422657
Target:  5'- cGGCGAgcaccaggagcGCCGCAuaGgCGGCGCCCAGuGCc -3'
miRNA:   3'- cUUGCU-----------UGGCGU--UgGCCGUGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 56838 0.66 0.881059
Target:  5'- cAACaccGCCGCGGCCagGGCGgCCGcGGCg -3'
miRNA:   3'- cUUGcu-UGGCGUUGG--CCGUgGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 56517 0.67 0.843426
Target:  5'- cAGCGGcaggcCCGgGcCCGGCGuucCCCGGGCa -3'
miRNA:   3'- cUUGCUu----GGCgUuGGCCGU---GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 55225 0.67 0.842622
Target:  5'- cAGCGGcCCGgugacagaauaCAACggaggguCGGCGCCCGGGCc -3'
miRNA:   3'- cUUGCUuGGC-----------GUUG-------GCCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 55139 0.76 0.364064
Target:  5'- -uGCGGGCUGUccauCCGGC-CCCAGGCc -3'
miRNA:   3'- cuUGCUUGGCGuu--GGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 54772 0.67 0.818524
Target:  5'- uGAugGuuGGCCGCGGCa-GCACCaGGGCc -3'
miRNA:   3'- -CUugC--UUGGCGUUGgcCGUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 54611 0.71 0.625332
Target:  5'- gGAcCGGACCGUAGCCaGC-CCgGGGUg -3'
miRNA:   3'- -CUuGCUUGGCGUUGGcCGuGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 54104 0.69 0.7357
Target:  5'- gGAGcCGAGcCCGCAuggggggugucCCGGgGCCCAGGg -3'
miRNA:   3'- -CUU-GCUU-GGCGUu----------GGCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 51602 0.67 0.859092
Target:  5'- aGGugGAGCUGC--CCGGCGgCCAGu- -3'
miRNA:   3'- -CUugCUUGGCGuuGGCCGUgGGUCcg -5'
5556 3' -56.7 NC_001806.1 + 51553 0.66 0.881059
Target:  5'- -uACGAGuacauCCGgcacuacgcuuCGGCCGcCACCCAGGCg -3'
miRNA:   3'- cuUGCUU-----GGC-----------GUUGGCcGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 50621 0.69 0.745378
Target:  5'- uGGCG-ACCGUGACCuuaaaguaCGCCCGGGCg -3'
miRNA:   3'- cUUGCuUGGCGUUGGcc------GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 50534 0.74 0.43148
Target:  5'- uGGGCGAcACCGCAgcgcGCCGGCugCUcgccaacagcGGGCu -3'
miRNA:   3'- -CUUGCU-UGGCGU----UGGCCGugGG----------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 49907 0.71 0.59488
Target:  5'- uGACGGAUCGUcgaacaaaAACCaGCcccGCCCAGGCg -3'
miRNA:   3'- cUUGCUUGGCG--------UUGGcCG---UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 49639 0.67 0.835305
Target:  5'- gGGACGcguGCCGgGcCCGGaGCuCCGGGCg -3'
miRNA:   3'- -CUUGCu--UGGCgUuGGCCgUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 49267 0.68 0.809878
Target:  5'- cGACGAGCCGC--CCGuGCGCCgucgacgggaAGGCc -3'
miRNA:   3'- cUUGCUUGGCGuuGGC-CGUGGg---------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 47683 0.66 0.893962
Target:  5'- -uGCGcGCCaGCGuCCGGCAgcugcacCgCCAGGCg -3'
miRNA:   3'- cuUGCuUGG-CGUuGGCCGU-------G-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 46197 0.67 0.851357
Target:  5'- cAGCGggUgGCGACUaaGGCcCCCGcGGCc -3'
miRNA:   3'- cUUGCuuGgCGUUGG--CCGuGGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 44419 0.68 0.789403
Target:  5'- uGAGCGAcgACCGCcccaacacauagcaGGCCGcGgGCCC-GGCg -3'
miRNA:   3'- -CUUGCU--UGGCG--------------UUGGC-CgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 44274 0.66 0.881059
Target:  5'- aGAGCGuccgcccCCGCAACCaggagcugGGCgACCUuGGCg -3'
miRNA:   3'- -CUUGCuu-----GGCGUUGG--------CCG-UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 43296 0.69 0.7357
Target:  5'- aGGCgGAGCCGCGGCUgcaGGagGCCCuGGCg -3'
miRNA:   3'- cUUG-CUUGGCGUUGG---CCg-UGGGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.