miRNA display CGI


Results 161 - 180 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 42190 0.68 0.764431
Target:  5'- cGGACGucGGCCGCAAUaCGGCGCuCCAcGUa -3'
miRNA:   3'- -CUUGC--UUGGCGUUG-GCCGUG-GGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 41486 0.7 0.665968
Target:  5'- cGAGCGucCCGCGuuauGCgGGCccagucguCCCAGGCc -3'
miRNA:   3'- -CUUGCuuGGCGU----UGgCCGu-------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 41344 0.71 0.625332
Target:  5'- -cACGuacauCUGCcccCCGGCAUCCAGGCc -3'
miRNA:   3'- cuUGCuu---GGCGuu-GGCCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 41196 0.73 0.52898
Target:  5'- gGAGCuGAACCGCAGCCaGaGCcccgcgccuaaagugGCCCAGGg -3'
miRNA:   3'- -CUUG-CUUGGCGUUGG-C-CG---------------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 40384 0.68 0.780264
Target:  5'- cGACGGucccccCCGCAuCCGGCuguacguuguaccgACCCAGGa -3'
miRNA:   3'- cUUGCUu-----GGCGUuGGCCG--------------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 38798 0.67 0.835305
Target:  5'- --cCGuuCCGCuuccGCgGGgACCCGGGCg -3'
miRNA:   3'- cuuGCuuGGCGu---UGgCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 37771 0.67 0.859092
Target:  5'- cGGGCGccuuUCGCu-CCGGgGCCgGGGCg -3'
miRNA:   3'- -CUUGCuu--GGCGuuGGCCgUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 37595 0.68 0.809878
Target:  5'- --uUGGcCCGCcagcACCGGgGCCCAGGg -3'
miRNA:   3'- cuuGCUuGGCGu---UGGCCgUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 36392 0.68 0.773788
Target:  5'- aAACGGccgcgcacACCGCAGCC-GCACCCcGcGCu -3'
miRNA:   3'- cUUGCU--------UGGCGUUGGcCGUGGGuC-CG- -5'
5556 3' -56.7 NC_001806.1 + 35580 0.69 0.754958
Target:  5'- cGAACGacGugCGCAgcGCCGGaguuuugGCCCuGGCg -3'
miRNA:   3'- -CUUGC--UugGCGU--UGGCCg------UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 35548 0.75 0.396852
Target:  5'- cAGCGAGCCGC--UCGGCGCgCCcGGCg -3'
miRNA:   3'- cUUGCUUGGCGuuGGCCGUG-GGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 34552 0.72 0.564668
Target:  5'- ---aGAGCCGCGAcCCGGCcGCCgGGGa -3'
miRNA:   3'- cuugCUUGGCGUU-GGCCG-UGGgUCCg -5'
5556 3' -56.7 NC_001806.1 + 33978 0.67 0.859092
Target:  5'- -uGCGGGCCGgGggucGCCGGgGCagGGGCg -3'
miRNA:   3'- cuUGCUUGGCgU----UGGCCgUGggUCCG- -5'
5556 3' -56.7 NC_001806.1 + 33591 0.66 0.88795
Target:  5'- -cGCGGGCaCGCGcgcccuuaauggACCGGCG-CgGGGCg -3'
miRNA:   3'- cuUGCUUG-GCGU------------UGGCCGUgGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 33299 0.67 0.827002
Target:  5'- aGACcAGCgGcCGGCCGGCGCUUAGGg -3'
miRNA:   3'- cUUGcUUGgC-GUUGGCCGUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 33119 0.68 0.78302
Target:  5'- cGGACGGggcccggaccGCCGCggUCGGgGgccccucguCCCGGGCc -3'
miRNA:   3'- -CUUGCU----------UGGCGuuGGCCgU---------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 32961 0.69 0.749222
Target:  5'- --cCGGGCCGgGGCCccuuggguccgccggGGC-CCCGGGCc -3'
miRNA:   3'- cuuGCUUGGCgUUGG---------------CCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 31270 0.69 0.716086
Target:  5'- uGGACuu-CCGCAGCCugcggucucGGCACCCGuGGUc -3'
miRNA:   3'- -CUUGcuuGGCGUUGG---------CCGUGGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 31231 0.66 0.881059
Target:  5'- gGAACauGCUGUucGACCagGGCACCCuaguGGGCg -3'
miRNA:   3'- -CUUGcuUGGCG--UUGG--CCGUGGG----UCCG- -5'
5556 3' -56.7 NC_001806.1 + 31102 0.66 0.887271
Target:  5'- -uGCGGGCCGCGguccccggcuggaGCCGccGCACCCu-GCu -3'
miRNA:   3'- cuUGCUUGGCGU-------------UGGC--CGUGGGucCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.