Results 181 - 200 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 6060 | 0.71 | 0.59488 |
Target: 5'- --cCGAcuCCGC-GCCGGCcccgggggcggGCCCGGGCg -3' miRNA: 3'- cuuGCUu-GGCGuUGGCCG-----------UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 89442 | 0.71 | 0.59488 |
Target: 5'- gGGugGGAUgGCAaaauuACCGGaCcCCCAGGCu -3' miRNA: 3'- -CUugCUUGgCGU-----UGGCC-GuGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 57093 | 0.71 | 0.59488 |
Target: 5'- aGAACaaGGGCCGCuccACCGGCcgccaguuugAgCCAGGCg -3' miRNA: 3'- -CUUG--CUUGGCGu--UGGCCG----------UgGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 49907 | 0.71 | 0.59488 |
Target: 5'- uGACGGAUCGUcgaacaaaAACCaGCcccGCCCAGGCg -3' miRNA: 3'- cUUGCUUGGCG--------UUGGcCG---UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 24026 | 0.72 | 0.584773 |
Target: 5'- -uGCGGGCCG-GACaCGGcCGCCUGGGCg -3' miRNA: 3'- cuUGCUUGGCgUUG-GCC-GUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 64944 | 0.72 | 0.584773 |
Target: 5'- uGAGgGAccACCGgcgUCGGCGCCCGGGCc -3' miRNA: 3'- -CUUgCU--UGGCguuGGCCGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 13252 | 0.72 | 0.583765 |
Target: 5'- -cACGAGCCGCAgguacguGCCGGCGgUCucaaacgcggGGGCg -3' miRNA: 3'- cuUGCUUGGCGU-------UGGCCGUgGG----------UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 1651 | 0.71 | 0.625332 |
Target: 5'- -uGCGAGugggccuccuccUCGCAGaaguCCGGCGCgCCGGGCg -3' miRNA: 3'- cuUGCUU------------GGCGUU----GGCCGUG-GGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 28000 | 0.71 | 0.625332 |
Target: 5'- gGAGCGAGaCGCAGCagccaGGCagACUCGGGCc -3' miRNA: 3'- -CUUGCUUgGCGUUGg----CCG--UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 41344 | 0.71 | 0.625332 |
Target: 5'- -cACGuacauCUGCcccCCGGCAUCCAGGCc -3' miRNA: 3'- cuUGCuu---GGCGuu-GGCCGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 96623 | 0.7 | 0.665968 |
Target: 5'- cGGCGAcaaCGCGACCGuCGCCgCGGGCc -3' miRNA: 3'- cUUGCUug-GCGUUGGCcGUGG-GUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 21291 | 0.7 | 0.664956 |
Target: 5'- gGGACGGGagggcccCCGCGGCgGGCACCgAcgccGGCg -3' miRNA: 3'- -CUUGCUU-------GGCGUUGgCCGUGGgU----CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 66832 | 0.7 | 0.655829 |
Target: 5'- cGggUGGccggugugcGCCGCcucCUGGgGCCCGGGCa -3' miRNA: 3'- -CuuGCU---------UGGCGuu-GGCCgUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 97096 | 0.7 | 0.655829 |
Target: 5'- -cACGAGCCGgGGCUGGCACaCCAc-- -3' miRNA: 3'- cuUGCUUGGCgUUGGCCGUG-GGUccg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 105430 | 0.71 | 0.645671 |
Target: 5'- cGACGAuCUGCGACCuGGCgcgcacguuuGCCCGGGa -3' miRNA: 3'- cUUGCUuGGCGUUGG-CCG----------UGGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 105339 | 0.71 | 0.645671 |
Target: 5'- -uACGAccaAUCGCccGCCGGCugCCGGGa -3' miRNA: 3'- cuUGCU---UGGCGu-UGGCCGugGGUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 111411 | 0.71 | 0.639571 |
Target: 5'- gGAACGAGgccgcagccuucucCCGgugccuuuccccccCGACCGGCACCC-GGCc -3' miRNA: 3'- -CUUGCUU--------------GGC--------------GUUGGCCGUGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 26994 | 0.71 | 0.63652 |
Target: 5'- cGAGCGGGCCGaccgggcucgguuCCGGCGCCgGguGGCg -3' miRNA: 3'- -CUUGCUUGGCguu----------GGCCGUGGgU--CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 92958 | 0.71 | 0.635503 |
Target: 5'- uGAugGAcGCCGUGGaCGcGCAUCCGGGCg -3' miRNA: 3'- -CUugCU-UGGCGUUgGC-CGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 54611 | 0.71 | 0.625332 |
Target: 5'- gGAcCGGACCGUAGCCaGC-CCgGGGUg -3' miRNA: 3'- -CUuGCUUGGCGUUGGcCGuGGgUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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