miRNA display CGI


Results 121 - 140 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 111411 0.71 0.639571
Target:  5'- gGAACGAGgccgcagccuucucCCGgugccuuuccccccCGACCGGCACCC-GGCc -3'
miRNA:   3'- -CUUGCUU--------------GGC--------------GUUGGCCGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 105339 0.71 0.645671
Target:  5'- -uACGAccaAUCGCccGCCGGCugCCGGGa -3'
miRNA:   3'- cuUGCU---UGGCGu-UGGCCGugGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 24026 0.72 0.584773
Target:  5'- -uGCGGGCCG-GACaCGGcCGCCUGGGCg -3'
miRNA:   3'- cuUGCUUGGCgUUG-GCC-GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 64944 0.72 0.584773
Target:  5'- uGAGgGAccACCGgcgUCGGCGCCCGGGCc -3'
miRNA:   3'- -CUUgCU--UGGCguuGGCCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 13252 0.72 0.583765
Target:  5'- -cACGAGCCGCAgguacguGCCGGCGgUCucaaacgcggGGGCg -3'
miRNA:   3'- cuUGCUUGGCGU-------UGGCCGUgGG----------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 24681 0.73 0.515322
Target:  5'- aGGCGGugCGC-GCCGGCccgGCCCGguGGCg -3'
miRNA:   3'- cUUGCUugGCGuUGGCCG---UGGGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 41196 0.73 0.52898
Target:  5'- gGAGCuGAACCGCAGCCaGaGCcccgcgccuaaagugGCCCAGGg -3'
miRNA:   3'- -CUUG-CUUGGCGUUGG-C-CG---------------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 21484 0.73 0.534875
Target:  5'- cGACGcAGCCGaCGccGCCGGCGaCCGGGCc -3'
miRNA:   3'- cUUGC-UUGGC-GU--UGGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22767 0.73 0.534875
Target:  5'- cGACGAcGCCGgGcGCC-GCGCCCAGGCc -3'
miRNA:   3'- cUUGCU-UGGCgU-UGGcCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 5762 0.72 0.54475
Target:  5'- gGAACGGGCaGgGGgCGGgGCCCGGGCc -3'
miRNA:   3'- -CUUGCUUGgCgUUgGCCgUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22047 0.72 0.54475
Target:  5'- cGGgGAGCCGUGGcCCGGCG-CCGGGCc -3'
miRNA:   3'- cUUgCUUGGCGUU-GGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 69685 0.72 0.54475
Target:  5'- uGGCGAGCCuGCGGCgGGCGCUCGuGGg -3'
miRNA:   3'- cUUGCUUGG-CGUUGgCCGUGGGU-CCg -5'
5556 3' -56.7 NC_001806.1 + 78345 0.72 0.553687
Target:  5'- cGAGCGcggcGCCGC-GCUGGgaaagcugaguccCGCCCAGGCg -3'
miRNA:   3'- -CUUGCu---UGGCGuUGGCC-------------GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 113940 0.72 0.558671
Target:  5'- cGGACuucAACCGCAACgaCGGCcagcugcugcacaacACCCAGGCc -3'
miRNA:   3'- -CUUGc--UUGGCGUUG--GCCG---------------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 30248 0.72 0.564668
Target:  5'- -uGCGAgcGCCGCcuCCGGgGCCC-GGCc -3'
miRNA:   3'- cuUGCU--UGGCGuuGGCCgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 34552 0.72 0.564668
Target:  5'- ---aGAGCCGCGAcCCGGCcGCCgGGGa -3'
miRNA:   3'- cuugCUUGGCGUU-GGCCG-UGGgUCCg -5'
5556 3' -56.7 NC_001806.1 + 21895 0.72 0.564668
Target:  5'- -cGCGGGCCGCAucgagcgccGCCGG-GCCCGcgcGGCg -3'
miRNA:   3'- cuUGCUUGGCGU---------UGGCCgUGGGU---CCG- -5'
5556 3' -56.7 NC_001806.1 + 126132 0.72 0.574701
Target:  5'- cGGACGAcgGCgGCGagGCCGGCGCCgAcacgcGGCg -3'
miRNA:   3'- -CUUGCU--UGgCGU--UGGCCGUGGgU-----CCG- -5'
5556 3' -56.7 NC_001806.1 + 139210 0.72 0.574701
Target:  5'- cGGACGAGCUGCGGaggCGGCACgCGacGGCc -3'
miRNA:   3'- -CUUGCUUGGCGUUg--GCCGUGgGU--CCG- -5'
5556 3' -56.7 NC_001806.1 + 103802 0.72 0.581748
Target:  5'- cGGGCGGcgccGCCGCGgcggcgacgggcucGCUGGguCCUAGGCu -3'
miRNA:   3'- -CUUGCU----UGGCGU--------------UGGCCguGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.