miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 134769 1.12 0.001563
Target:  5'- aGAACGAACCGCAACCGGCACCCAGGCg -3'
miRNA:   3'- -CUUGCUUGGCGUUGGCCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1605 0.89 0.058373
Target:  5'- -cACGGGCCGCAGCgGcGCGCCCAGGCc -3'
miRNA:   3'- cuUGCUUGGCGUUGgC-CGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 81343 0.83 0.12878
Target:  5'- -cGCGGGCCGCAACCaGGCGgCCgGGGCg -3'
miRNA:   3'- cuUGCUUGGCGUUGG-CCGU-GGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 89524 0.8 0.207944
Target:  5'- cGGCGAGCUGCuGCgCGGCGCCCcGGCc -3'
miRNA:   3'- cUUGCUUGGCGuUG-GCCGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 79534 0.79 0.229245
Target:  5'- --cCGAAagcaCGCGGCCGGCGCCCguGGGCc -3'
miRNA:   3'- cuuGCUUg---GCGUUGGCCGUGGG--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 102512 0.79 0.246408
Target:  5'- --cCGAucACCGCGGCCaGGCACgCCAGGUa -3'
miRNA:   3'- cuuGCU--UGGCGUUGG-CCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 20643 0.78 0.264622
Target:  5'- cAACGGGCCGCGGCCacgGGC-CCCcGGCg -3'
miRNA:   3'- cUUGCUUGGCGUUGG---CCGuGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 87395 0.78 0.283913
Target:  5'- --cCGGGCUGCGGCCGGaCGCUUGGGCg -3'
miRNA:   3'- cuuGCUUGGCGUUGGCC-GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 2925 0.76 0.356166
Target:  5'- -cGCGGGCCGCcGCCuccgGGCGgCCGGGCc -3'
miRNA:   3'- cuUGCUUGGCGuUGG----CCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 55139 0.76 0.364064
Target:  5'- -uGCGGGCUGUccauCCGGC-CCCAGGCc -3'
miRNA:   3'- cuUGCUUGGCGuu--GGCCGuGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 3256 0.76 0.372083
Target:  5'- -cACGAACCGCAGCuCGcgcagccacGCGCgCAGGCg -3'
miRNA:   3'- cuUGCUUGGCGUUG-GC---------CGUGgGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 26399 0.76 0.380222
Target:  5'- -cGCGGcccccGCCGCccCCGGcCGCCCGGGCc -3'
miRNA:   3'- cuUGCU-----UGGCGuuGGCC-GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 136532 0.76 0.380222
Target:  5'- uGACGGGCCGCucgggccgcCCGGCGCaaagCAGGCg -3'
miRNA:   3'- cUUGCUUGGCGuu-------GGCCGUGg---GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 128534 0.75 0.387647
Target:  5'- -uGCGGGCCGCAGCCagacGGCGgCCCgcguccaGGGCg -3'
miRNA:   3'- cuUGCUUGGCGUUGG----CCGU-GGG-------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 35548 0.75 0.396852
Target:  5'- cAGCGAGCCGC--UCGGCGCgCCcGGCg -3'
miRNA:   3'- cUUGCUUGGCGuuGGCCGUG-GGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 2771 0.75 0.396852
Target:  5'- cGGGCGGGCCugcgccgcgGCGGCCcggGGCGCCgCGGGCu -3'
miRNA:   3'- -CUUGCUUGG---------CGUUGG---CCGUGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 105881 0.75 0.405341
Target:  5'- -cAUGGACCGCAuguACUGGCGCgacacgaacaCCGGGCg -3'
miRNA:   3'- cuUGCUUGGCGU---UGGCCGUG----------GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 24847 0.75 0.413943
Target:  5'- -cACGGGCCGCAG-CGGCACCgugcuGGCg -3'
miRNA:   3'- cuUGCUUGGCGUUgGCCGUGGgu---CCG- -5'
5556 3' -56.7 NC_001806.1 + 22106 0.75 0.42178
Target:  5'- uGGGCGAcaGCCGCccgGGCCucuggggGGCGCCCgAGGCg -3'
miRNA:   3'- -CUUGCU--UGGCG---UUGG-------CCGUGGG-UCCG- -5'
5556 3' -56.7 NC_001806.1 + 56986 0.75 0.422657
Target:  5'- cGGCGAgcaccaggagcGCCGCAuaGgCGGCGCCCAGuGCc -3'
miRNA:   3'- cUUGCU-----------UGGCGU--UgGCCGUGGGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.