miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 91169 0.66 0.881059
Target:  5'- aGGACacGGCCGCGGCCcGCGCCaacgccgucgGGGCg -3'
miRNA:   3'- -CUUGc-UUGGCGUUGGcCGUGGg---------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 93604 0.66 0.881059
Target:  5'- ---gGGACCgGCAuuuGCCGGCcGCaaaCGGGCg -3'
miRNA:   3'- cuugCUUGG-CGU---UGGCCG-UGg--GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 56838 0.66 0.881059
Target:  5'- cAACaccGCCGCGGCCagGGCGgCCGcGGCg -3'
miRNA:   3'- cUUGcu-UGGCGUUGG--CCGUgGGU-CCG- -5'
5556 3' -56.7 NC_001806.1 + 89898 0.66 0.881059
Target:  5'- gGGACc--CCGCGuuGCCGGCcGCCgGGGUu -3'
miRNA:   3'- -CUUGcuuGGCGU--UGGCCG-UGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 77770 0.66 0.881059
Target:  5'- cAACcGGCUuCAGCUGGCccucagcgacGCCCAGGCc -3'
miRNA:   3'- cUUGcUUGGcGUUGGCCG----------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 6225 0.66 0.881059
Target:  5'- gGAGCGGACgGCGucggcAUCGcGaCGCCCcGGCu -3'
miRNA:   3'- -CUUGCUUGgCGU-----UGGC-C-GUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 83991 0.66 0.881059
Target:  5'- -cGCGAGCCGgAggagucGCCGGaUACgUGGGCg -3'
miRNA:   3'- cuUGCUUGGCgU------UGGCC-GUGgGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22863 0.66 0.880357
Target:  5'- cGGCGAccuggcgGCCGUcccggggcuGGCCGGgGCCC-GGCc -3'
miRNA:   3'- cUUGCU-------UGGCG---------UUGGCCgUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 21123 0.66 0.873948
Target:  5'- aGAACaAGCaGCGccCCGGCucCCCGGGCc -3'
miRNA:   3'- -CUUGcUUGgCGUu-GGCCGu-GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 20173 0.66 0.873948
Target:  5'- --cCGGGcCCGCccccggGGCCGGCGCggagUCGGGCa -3'
miRNA:   3'- cuuGCUU-GGCG------UUGGCCGUG----GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 109528 0.66 0.873948
Target:  5'- cAGCGAGCUcgGgAGCCGggggagguGCGCCUGGGCc -3'
miRNA:   3'- cUUGCUUGG--CgUUGGC--------CGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 82097 0.66 0.873948
Target:  5'- -uGCuGGCCaucauCGGCCgGGCAUCCAGGCc -3'
miRNA:   3'- cuUGcUUGGc----GUUGG-CCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 2740 0.66 0.873948
Target:  5'- cGGCGGGCCggcGCGACaCGGC-CaCgGGGCg -3'
miRNA:   3'- cUUGCUUGG---CGUUG-GCCGuG-GgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 100473 0.66 0.873948
Target:  5'- cGGACGAuuggGC-ACCGGuCACCCugcGGCg -3'
miRNA:   3'- -CUUGCUugg-CGuUGGCC-GUGGGu--CCG- -5'
5556 3' -56.7 NC_001806.1 + 12787 0.66 0.873948
Target:  5'- -cGCccACCGC-GCCGGCGaUCAGGCc -3'
miRNA:   3'- cuUGcuUGGCGuUGGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 123933 0.66 0.873948
Target:  5'- aAACuGAACCGCccGCCccugcGCAgauCCCAGGCg -3'
miRNA:   3'- cUUG-CUUGGCGu-UGGc----CGU---GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 83550 0.66 0.873948
Target:  5'- -cAUGGACCGCcacuuuCUGcGCACCaagaAGGCg -3'
miRNA:   3'- cuUGCUUGGCGuu----GGC-CGUGGg---UCCG- -5'
5556 3' -56.7 NC_001806.1 + 7462 0.66 0.869579
Target:  5'- -cGCGAACCaCGuaCGGCucgcgggucuguauaGCCCGGGCa -3'
miRNA:   3'- cuUGCUUGGcGUugGCCG---------------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 105144 0.66 0.866624
Target:  5'- gGGGCGGccguGCCGCcccaggguGCCGaGC-CCCAGaGCa -3'
miRNA:   3'- -CUUGCU----UGGCGu-------UGGC-CGuGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 9012 0.66 0.866624
Target:  5'- aGGCGGACCacCGGCCcuuuauGCGCCuCGGGCa -3'
miRNA:   3'- cUUGCUUGGc-GUUGGc-----CGUGG-GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.