miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 5' -58.1 NC_001806.1 + 25416 0.66 0.803243
Target:  5'- gGCGagGgGCGGUGgUGGUGcGCGGg--- -3'
miRNA:   3'- -UGCg-CgCGCUACgACCAC-CGCCauuu -5'
5556 5' -58.1 NC_001806.1 + 68344 0.66 0.775862
Target:  5'- gACGCGCGgGAcUGCUGGcGGCc----- -3'
miRNA:   3'- -UGCGCGCgCU-ACGACCaCCGccauuu -5'
5556 5' -58.1 NC_001806.1 + 148036 0.66 0.766466
Target:  5'- cCGC-CGCuGcUGUUGGUGGUGGUGu- -3'
miRNA:   3'- uGCGcGCG-CuACGACCACCGCCAUuu -5'
5556 5' -58.1 NC_001806.1 + 99615 0.66 0.766466
Target:  5'- gGCGCGCGUcugGGUGgaaggacaUGGgGGCGGUGGc -3'
miRNA:   3'- -UGCGCGCG---CUACg-------ACCaCCGCCAUUu -5'
5556 5' -58.1 NC_001806.1 + 23005 0.66 0.765519
Target:  5'- uCGUGCGCGAcgcGCUGGUGcucaugcgccugcGCGGg--- -3'
miRNA:   3'- uGCGCGCGCUa--CGACCAC-------------CGCCauuu -5'
5556 5' -58.1 NC_001806.1 + 51272 0.67 0.747323
Target:  5'- cGCGCgGCGCGAgcucccugcgGCUGGc-GCGGUGc- -3'
miRNA:   3'- -UGCG-CGCGCUa---------CGACCacCGCCAUuu -5'
5556 5' -58.1 NC_001806.1 + 111214 0.67 0.747323
Target:  5'- cUGCGCGgccggggccuCGAUGUgGGUGGCGGc--- -3'
miRNA:   3'- uGCGCGC----------GCUACGaCCACCGCCauuu -5'
5556 5' -58.1 NC_001806.1 + 45507 0.67 0.737595
Target:  5'- cUGUGUGgGGUGaggGGUGGgGGUGGAg -3'
miRNA:   3'- uGCGCGCgCUACga-CCACCgCCAUUU- -5'
5556 5' -58.1 NC_001806.1 + 26231 0.67 0.727775
Target:  5'- uCGCGCGCGGcccuuuaaaGC-GGUGGCGGc--- -3'
miRNA:   3'- uGCGCGCGCUa--------CGaCCACCGCCauuu -5'
5556 5' -58.1 NC_001806.1 + 89773 0.68 0.687761
Target:  5'- gACGCGCGgGGcgugggagggGCUGG-GGCGGa--- -3'
miRNA:   3'- -UGCGCGCgCUa---------CGACCaCCGCCauuu -5'
5556 5' -58.1 NC_001806.1 + 2799 0.69 0.626523
Target:  5'- gGCGC-CGCGG-GCUGGgcgggGGCGGg--- -3'
miRNA:   3'- -UGCGcGCGCUaCGACCa----CCGCCauuu -5'
5556 5' -58.1 NC_001806.1 + 78645 0.69 0.599929
Target:  5'- gGCGCGCGUuacggccauggaccuGGUGCUGGcGGCaGUGc- -3'
miRNA:   3'- -UGCGCGCG---------------CUACGACCaCCGcCAUuu -5'
5556 5' -58.1 NC_001806.1 + 15301 0.69 0.595849
Target:  5'- uCGgGCGUGGUaagGCUGaUGGCGGUGGGa -3'
miRNA:   3'- uGCgCGCGCUA---CGACcACCGCCAUUU- -5'
5556 5' -58.1 NC_001806.1 + 25888 0.7 0.585668
Target:  5'- cGCGCGCGCGcaaaaaagGCgGGcGGCGGUc-- -3'
miRNA:   3'- -UGCGCGCGCua------CGaCCaCCGCCAuuu -5'
5556 5' -58.1 NC_001806.1 + 132772 0.7 0.545347
Target:  5'- cUGCcCGCGGUGCgGGaGGCGGUGGc -3'
miRNA:   3'- uGCGcGCGCUACGaCCaCCGCCAUUu -5'
5556 5' -58.1 NC_001806.1 + 81565 0.7 0.545347
Target:  5'- gACGCuaucgGUGguaaCGGUGCUGG-GGCGGUGAAa -3'
miRNA:   3'- -UGCG-----CGC----GCUACGACCaCCGCCAUUU- -5'
5556 5' -58.1 NC_001806.1 + 86239 0.72 0.458545
Target:  5'- uACGCGCGCGGgugucUGCUcaGUucGGCGGUGAGg -3'
miRNA:   3'- -UGCGCGCGCU-----ACGAc-CA--CCGCCAUUU- -5'
5556 5' -58.1 NC_001806.1 + 143277 0.72 0.440249
Target:  5'- gUGCGCGggagguguCGGUGgUGGUGGUGGUGGu -3'
miRNA:   3'- uGCGCGC--------GCUACgACCACCGCCAUUu -5'
5556 5' -58.1 NC_001806.1 + 50349 0.72 0.440249
Target:  5'- -gGgGCGCG-UGCUGGaugugcUGGCGGUGAu -3'
miRNA:   3'- ugCgCGCGCuACGACC------ACCGCCAUUu -5'
5556 5' -58.1 NC_001806.1 + 25930 0.74 0.363415
Target:  5'- cGCGCGCGCGGcggGCgUGGgGGCGGg--- -3'
miRNA:   3'- -UGCGCGCGCUa--CG-ACCaCCGCCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.