Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5557 | 3' | -56.6 | NC_001806.1 | + | 134643 | 1.1 | 0.001963 |
Target: 5'- cAGGCUGUGCACGUGGUCCUCGUUGGCc -3' miRNA: 3'- -UCCGACACGUGCACCAGGAGCAACCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 14402 | 0.67 | 0.828113 |
Target: 5'- gGGGC-GUGCGuuaaGgGGUCCguugUGUUGGCc -3' miRNA: 3'- -UCCGaCACGUg---CaCCAGGa---GCAACCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 13597 | 0.67 | 0.844545 |
Target: 5'- gAGGCUGggggGCugGaacgGGUCCg-GUaGGCc -3' miRNA: 3'- -UCCGACa---CGugCa---CCAGGagCAaCCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 125773 | 0.66 | 0.86021 |
Target: 5'- --cCUG-GC-CGUGGUCCUCGaggaGGCg -3' miRNA: 3'- uccGACaCGuGCACCAGGAGCaa--CCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 31053 | 0.66 | 0.867738 |
Target: 5'- gGGGC---GUACGUGGUCCUgGU-GGa -3' miRNA: 3'- -UCCGacaCGUGCACCAGGAgCAaCCg -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 133285 | 0.66 | 0.867738 |
Target: 5'- cGGCUGcgGCACccacugugccUGGcCCUCGagGGCg -3' miRNA: 3'- uCCGACa-CGUGc---------ACCaGGAGCaaCCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 89485 | 0.66 | 0.889038 |
Target: 5'- cGGCaUGUGCAag-GG-CCUUGUuugucUGGCg -3' miRNA: 3'- uCCG-ACACGUgcaCCaGGAGCA-----ACCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 35117 | 0.66 | 0.889038 |
Target: 5'- aAGGCgcgucccGUGgACGcGGcCCUCGguugGGCg -3' miRNA: 3'- -UCCGa------CACgUGCaCCaGGAGCaa--CCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 34262 | 0.66 | 0.895694 |
Target: 5'- uGGCUGgggGCuuauAUGUggGGUCC-CGggGGCg -3' miRNA: 3'- uCCGACa--CG----UGCA--CCAGGaGCaaCCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 37788 | 0.67 | 0.819627 |
Target: 5'- gGGGCcGggGCGCGggGGUCCgcgggCGggggGGCa -3' miRNA: 3'- -UCCGaCa-CGUGCa-CCAGGa----GCaa--CCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 61593 | 0.68 | 0.810972 |
Target: 5'- gAGGCcgucgUGUGCACGg---CCUCGUcccGGCu -3' miRNA: 3'- -UCCG-----ACACGUGCaccaGGAGCAa--CCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 24680 | 0.68 | 0.784072 |
Target: 5'- gAGGCgGUGCGCGccGGcCCggccCGgUGGCg -3' miRNA: 3'- -UCCGaCACGUGCa-CCaGGa---GCaACCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 92897 | 0.76 | 0.340343 |
Target: 5'- cAGGCUGcgGcCGCGUGGUCCgCGcagGGCg -3' miRNA: 3'- -UCCGACa-C-GUGCACCAGGaGCaa-CCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 127524 | 0.75 | 0.379946 |
Target: 5'- cGGuGCUGUaCACGgGGUCCUCGgcgGGCu -3' miRNA: 3'- -UC-CGACAcGUGCaCCAGGAGCaa-CCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 22279 | 0.7 | 0.656529 |
Target: 5'- uGGCUccagaacccGCGCGUGGUCCcCGgggacgUGGCg -3' miRNA: 3'- uCCGAca-------CGUGCACCAGGaGCa-----ACCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 132731 | 0.7 | 0.686956 |
Target: 5'- cGaGCUG-GCccgGCGUGG-CCUCGgcGGCa -3' miRNA: 3'- uC-CGACaCG---UGCACCaGGAGCaaCCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 13059 | 0.69 | 0.703033 |
Target: 5'- cGGCgacgGUGCGC-UGGUUCUCGgggaugaagcggGGCa -3' miRNA: 3'- uCCGa---CACGUGcACCAGGAGCaa----------CCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 96428 | 0.69 | 0.716977 |
Target: 5'- gGGGUUGacGCugGgGGUCCUgG-UGGCg -3' miRNA: 3'- -UCCGACa-CGugCaCCAGGAgCaACCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 119034 | 0.68 | 0.765445 |
Target: 5'- cGGcGCUGcGCcuuGCGUGGggCUCGggGGCg -3' miRNA: 3'- -UC-CGACaCG---UGCACCagGAGCaaCCG- -5' |
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5557 | 3' | -56.6 | NC_001806.1 | + | 93208 | 0.68 | 0.784072 |
Target: 5'- cGGGUuugUGUGCGCGgccucaagCCUCGgcGGCg -3' miRNA: 3'- -UCCG---ACACGUGCacca----GGAGCaaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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