Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5557 | 5' | -55.8 | NC_001806.1 | + | 25931 | 0.66 | 0.919922 |
Target: 5'- gCGCgCGCgGCGGgcgugggggcggGGCCGCGggAGCg- -3' miRNA: 3'- gGCG-GUGgCGCU------------UCGGCGCuaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 85730 | 0.66 | 0.925391 |
Target: 5'- aCCGCC-CCGaacccugcggucCGGAGCCGCGcgGccACg- -3' miRNA: 3'- -GGCGGuGGC------------GCUUCGGCGCuaU--UGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 75231 | 0.66 | 0.908281 |
Target: 5'- -gGCgCACCGCGuccuGGUcgaCGCGGUGACg- -3' miRNA: 3'- ggCG-GUGGCGCu---UCG---GCGCUAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 41588 | 0.66 | 0.916528 |
Target: 5'- aCCGCCgcauuacggauaagcGCCGCGAucGCCGgGG-GugUGg -3' miRNA: 3'- -GGCGG---------------UGGCGCUu-CGGCgCUaUugAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 73293 | 0.66 | 0.913636 |
Target: 5'- uCCGCCGCCcuggcccGCGAGgucGCCGCGuguucgcGGCUc -3' miRNA: 3'- -GGCGGUGG-------CGCUU---CGGCGCua-----UUGAc -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 30190 | 0.66 | 0.919922 |
Target: 5'- cCCGCguCCGCG--GCCGCGucggGACc- -3' miRNA: 3'- -GGCGguGGCGCuuCGGCGCua--UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 76884 | 0.66 | 0.914219 |
Target: 5'- cCCGUCGCCGCGucgAGGCCcuGCGGa----- -3' miRNA: 3'- -GGCGGUGGCGC---UUCGG--CGCUauugac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 75720 | 0.66 | 0.925391 |
Target: 5'- -gGCCGCCGacgugGAGGCCGU----GCUGg -3' miRNA: 3'- ggCGGUGGCg----CUUCGGCGcuauUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 69258 | 0.66 | 0.908281 |
Target: 5'- uCCGCCGgCGCccAGCaGCGGcuGCUGg -3' miRNA: 3'- -GGCGGUgGCGcuUCGgCGCUauUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 1825 | 0.66 | 0.914219 |
Target: 5'- uUGCCGCCGCGGcacaGGCgcaGCGGcGGCg- -3' miRNA: 3'- gGCGGUGGCGCU----UCGg--CGCUaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 132662 | 0.66 | 0.908281 |
Target: 5'- gCCGCgGCCGCuuacGCCGCGcuc-CUGg -3' miRNA: 3'- -GGCGgUGGCGcuu-CGGCGCuauuGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 97940 | 0.66 | 0.925391 |
Target: 5'- uUGCCAUCGCGuggugcGAGCUGCaGAaucacgAGCUGa -3' miRNA: 3'- gGCGGUGGCGC------UUCGGCG-CUa-----UUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 13586 | 0.66 | 0.908281 |
Target: 5'- aCCGUgAUCGgGAGGCUGgGG-GGCUGg -3' miRNA: 3'- -GGCGgUGGCgCUUCGGCgCUaUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 85194 | 0.66 | 0.908281 |
Target: 5'- gCCGCCaccaGCCGCGAGGCC-CuaaucCUGg -3' miRNA: 3'- -GGCGG----UGGCGCUUCGGcGcuauuGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 2930 | 0.66 | 0.925391 |
Target: 5'- gCCGCCGCCuccggGCGGccgGGCCGgGccggGACUc -3' miRNA: 3'- -GGCGGUGG-----CGCU---UCGGCgCua--UUGAc -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 33741 | 0.66 | 0.930623 |
Target: 5'- gCGCCGgcuCUGCGGugucggcggcGGCUGCGGcGGCUGc -3' miRNA: 3'- gGCGGU---GGCGCU----------UCGGCGCUaUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 68612 | 0.66 | 0.925391 |
Target: 5'- uCCGCCagugcGCCGUGGAGUgGauaGAccGCUGg -3' miRNA: 3'- -GGCGG-----UGGCGCUUCGgCg--CUauUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 123823 | 0.66 | 0.919922 |
Target: 5'- cCCGCCACCGaucCGGccuCCGCGAgcgGCUu -3' miRNA: 3'- -GGCGGUGGC---GCUuc-GGCGCUau-UGAc -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 3041 | 0.66 | 0.908281 |
Target: 5'- gCCGCCGCCGCcagcaGggGgCGCaggcuCUGg -3' miRNA: 3'- -GGCGGUGGCG-----CuuCgGCGcuauuGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 101856 | 0.66 | 0.919922 |
Target: 5'- gCGCCGCCugGCG-GGCCccCGAUGACa- -3' miRNA: 3'- gGCGGUGG--CGCuUCGGc-GCUAUUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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