Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5557 | 5' | -55.8 | NC_001806.1 | + | 33741 | 0.66 | 0.930623 |
Target: 5'- gCGCCGgcuCUGCGGugucggcggcGGCUGCGGcGGCUGc -3' miRNA: 3'- gGCGGU---GGCGCU----------UCGGCGCUaUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 131813 | 0.75 | 0.442222 |
Target: 5'- uCCGUCACCGCGAcggAGCUGCGGgauuuCUa -3' miRNA: 3'- -GGCGGUGGCGCU---UCGGCGCUauu--GAc -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 113865 | 0.75 | 0.442222 |
Target: 5'- aCCGCCAUCGCGAcuGCCGgGuUAGCg- -3' miRNA: 3'- -GGCGGUGGCGCUu-CGGCgCuAUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 119190 | 0.75 | 0.45127 |
Target: 5'- gCGCCGCCGCcccgccGGCCGCGAaggaGGCUGc -3' miRNA: 3'- gGCGGUGGCGcu----UCGGCGCUa---UUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 76547 | 0.74 | 0.526974 |
Target: 5'- -gGUCACgGCGggGCUGCGGgagguGCUGg -3' miRNA: 3'- ggCGGUGgCGCuuCGGCGCUau---UGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 86667 | 0.74 | 0.526974 |
Target: 5'- cCCgGCgGCCGUGAGGCCGCGGcacAGCa- -3' miRNA: 3'- -GG-CGgUGGCGCUUCGGCGCUa--UUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 114071 | 0.74 | 0.526974 |
Target: 5'- cCCGCCuucUCGCGggGCCGCu---GCUGc -3' miRNA: 3'- -GGCGGu--GGCGCuuCGGCGcuauUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 95038 | 0.73 | 0.566596 |
Target: 5'- -aGaCCGCCGCGGuGGCCGUGG-AACUGg -3' miRNA: 3'- ggC-GGUGGCGCU-UCGGCGCUaUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 112333 | 0.73 | 0.566596 |
Target: 5'- -gGCCACCGCcggGAGGCCGuCGAggcCUGg -3' miRNA: 3'- ggCGGUGGCG---CUUCGGC-GCUauuGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 42231 | 0.76 | 0.433278 |
Target: 5'- cCCgGCCGCCGCGGccCCGCGGgcguACUGg -3' miRNA: 3'- -GG-CGGUGGCGCUucGGCGCUau--UGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 147992 | 0.76 | 0.433278 |
Target: 5'- aCGCCccCCGCGgcGCCGCGGcucgcGACUGg -3' miRNA: 3'- gGCGGu-GGCGCuuCGGCGCUa----UUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 58800 | 0.76 | 0.424439 |
Target: 5'- aCGCCGCCGUGGGuccgcGCCaGCGAUaccGACUGa -3' miRNA: 3'- gGCGGUGGCGCUU-----CGG-CGCUA---UUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 22972 | 0.82 | 0.204023 |
Target: 5'- cCCGCCugCGCGcguGGCUGCGcgAGCUGc -3' miRNA: 3'- -GGCGGugGCGCu--UCGGCGCuaUUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 107035 | 0.81 | 0.224967 |
Target: 5'- -gGCCGcCCGCGggGCCGCGG--GCUGu -3' miRNA: 3'- ggCGGU-GGCGCuuCGGCGCUauUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 76287 | 0.8 | 0.25916 |
Target: 5'- gCCGCCGCCGCGGAGgagauauCCGCGGUGcGCa- -3' miRNA: 3'- -GGCGGUGGCGCUUC-------GGCGCUAU-UGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 126111 | 0.77 | 0.37376 |
Target: 5'- uUCGCUACUGCGuGGGCCGCGcgGACg- -3' miRNA: 3'- -GGCGGUGGCGC-UUCGGCGCuaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 119690 | 0.77 | 0.381917 |
Target: 5'- cCUGgUACCGCaAAGCCGCGGUcGCUGg -3' miRNA: 3'- -GGCgGUGGCGcUUCGGCGCUAuUGAC- -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 24412 | 0.77 | 0.390192 |
Target: 5'- gCCGCCGCUGCGccuguGCCGCGGcGGCa- -3' miRNA: 3'- -GGCGGUGGCGCuu---CGGCGCUaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 117800 | 0.76 | 0.398584 |
Target: 5'- aCCGCCACC-CGGAcGCCGCGA-AACg- -3' miRNA: 3'- -GGCGGUGGcGCUU-CGGCGCUaUUGac -5' |
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5557 | 5' | -55.8 | NC_001806.1 | + | 29948 | 0.76 | 0.398584 |
Target: 5'- cCCGCCagucgcgaGCCGCGgcGCCGCGGggGGCg- -3' miRNA: 3'- -GGCGG--------UGGCGCuuCGGCGCUa-UUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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