miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 33741 0.66 0.930623
Target:  5'- gCGCCGgcuCUGCGGugucggcggcGGCUGCGGcGGCUGc -3'
miRNA:   3'- gGCGGU---GGCGCU----------UCGGCGCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 131813 0.75 0.442222
Target:  5'- uCCGUCACCGCGAcggAGCUGCGGgauuuCUa -3'
miRNA:   3'- -GGCGGUGGCGCU---UCGGCGCUauu--GAc -5'
5557 5' -55.8 NC_001806.1 + 113865 0.75 0.442222
Target:  5'- aCCGCCAUCGCGAcuGCCGgGuUAGCg- -3'
miRNA:   3'- -GGCGGUGGCGCUu-CGGCgCuAUUGac -5'
5557 5' -55.8 NC_001806.1 + 119190 0.75 0.45127
Target:  5'- gCGCCGCCGCcccgccGGCCGCGAaggaGGCUGc -3'
miRNA:   3'- gGCGGUGGCGcu----UCGGCGCUa---UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 76547 0.74 0.526974
Target:  5'- -gGUCACgGCGggGCUGCGGgagguGCUGg -3'
miRNA:   3'- ggCGGUGgCGCuuCGGCGCUau---UGAC- -5'
5557 5' -55.8 NC_001806.1 + 86667 0.74 0.526974
Target:  5'- cCCgGCgGCCGUGAGGCCGCGGcacAGCa- -3'
miRNA:   3'- -GG-CGgUGGCGCUUCGGCGCUa--UUGac -5'
5557 5' -55.8 NC_001806.1 + 114071 0.74 0.526974
Target:  5'- cCCGCCuucUCGCGggGCCGCu---GCUGc -3'
miRNA:   3'- -GGCGGu--GGCGCuuCGGCGcuauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 95038 0.73 0.566596
Target:  5'- -aGaCCGCCGCGGuGGCCGUGG-AACUGg -3'
miRNA:   3'- ggC-GGUGGCGCU-UCGGCGCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 112333 0.73 0.566596
Target:  5'- -gGCCACCGCcggGAGGCCGuCGAggcCUGg -3'
miRNA:   3'- ggCGGUGGCG---CUUCGGC-GCUauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 42231 0.76 0.433278
Target:  5'- cCCgGCCGCCGCGGccCCGCGGgcguACUGg -3'
miRNA:   3'- -GG-CGGUGGCGCUucGGCGCUau--UGAC- -5'
5557 5' -55.8 NC_001806.1 + 147992 0.76 0.433278
Target:  5'- aCGCCccCCGCGgcGCCGCGGcucgcGACUGg -3'
miRNA:   3'- gGCGGu-GGCGCuuCGGCGCUa----UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 58800 0.76 0.424439
Target:  5'- aCGCCGCCGUGGGuccgcGCCaGCGAUaccGACUGa -3'
miRNA:   3'- gGCGGUGGCGCUU-----CGG-CGCUA---UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 22972 0.82 0.204023
Target:  5'- cCCGCCugCGCGcguGGCUGCGcgAGCUGc -3'
miRNA:   3'- -GGCGGugGCGCu--UCGGCGCuaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 107035 0.81 0.224967
Target:  5'- -gGCCGcCCGCGggGCCGCGG--GCUGu -3'
miRNA:   3'- ggCGGU-GGCGCuuCGGCGCUauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 76287 0.8 0.25916
Target:  5'- gCCGCCGCCGCGGAGgagauauCCGCGGUGcGCa- -3'
miRNA:   3'- -GGCGGUGGCGCUUC-------GGCGCUAU-UGac -5'
5557 5' -55.8 NC_001806.1 + 126111 0.77 0.37376
Target:  5'- uUCGCUACUGCGuGGGCCGCGcgGACg- -3'
miRNA:   3'- -GGCGGUGGCGC-UUCGGCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 119690 0.77 0.381917
Target:  5'- cCUGgUACCGCaAAGCCGCGGUcGCUGg -3'
miRNA:   3'- -GGCgGUGGCGcUUCGGCGCUAuUGAC- -5'
5557 5' -55.8 NC_001806.1 + 24412 0.77 0.390192
Target:  5'- gCCGCCGCUGCGccuguGCCGCGGcGGCa- -3'
miRNA:   3'- -GGCGGUGGCGCuu---CGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 117800 0.76 0.398584
Target:  5'- aCCGCCACC-CGGAcGCCGCGA-AACg- -3'
miRNA:   3'- -GGCGGUGGcGCUU-CGGCGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 29948 0.76 0.398584
Target:  5'- cCCGCCagucgcgaGCCGCGgcGCCGCGGggGGCg- -3'
miRNA:   3'- -GGCGG--------UGGCGCuuCGGCGCUa-UUGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.