miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 3041 0.66 0.908281
Target:  5'- gCCGCCGCCGCcagcaGggGgCGCaggcuCUGg -3'
miRNA:   3'- -GGCGGUGGCG-----CuuCgGCGcuauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 132662 0.66 0.908281
Target:  5'- gCCGCgGCCGCuuacGCCGCGcuc-CUGg -3'
miRNA:   3'- -GGCGgUGGCGcuu-CGGCGCuauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 13586 0.66 0.908281
Target:  5'- aCCGUgAUCGgGAGGCUGgGG-GGCUGg -3'
miRNA:   3'- -GGCGgUGGCgCUUCGGCgCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 75231 0.66 0.908281
Target:  5'- -gGCgCACCGCGuccuGGUcgaCGCGGUGACg- -3'
miRNA:   3'- ggCG-GUGGCGCu---UCG---GCGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 148068 0.67 0.904607
Target:  5'- aCUGCUGCCGUGuGGCC-CGAUGggcgccgaggggggcGCUGu -3'
miRNA:   3'- -GGCGGUGGCGCuUCGGcGCUAU---------------UGAC- -5'
5557 5' -55.8 NC_001806.1 + 92900 0.67 0.902111
Target:  5'- gCUGCgGCCGCGuGGuCCGCGcagGGCg- -3'
miRNA:   3'- -GGCGgUGGCGCuUC-GGCGCua-UUGac -5'
5557 5' -55.8 NC_001806.1 + 75985 0.67 0.902111
Target:  5'- gCGCgGCCuuCGggGCCGCGGccGACa- -3'
miRNA:   3'- gGCGgUGGc-GCuuCGGCGCUa-UUGac -5'
5557 5' -55.8 NC_001806.1 + 30308 0.67 0.902111
Target:  5'- cCCGCC-CCGCGGAcgcgcGCCGUGu--GCc- -3'
miRNA:   3'- -GGCGGuGGCGCUU-----CGGCGCuauUGac -5'
5557 5' -55.8 NC_001806.1 + 5948 0.67 0.902111
Target:  5'- aCCGCC-CCaaggggGCGggGCCGCcgGGUAAa-- -3'
miRNA:   3'- -GGCGGuGG------CGCuuCGGCG--CUAUUgac -5'
5557 5' -55.8 NC_001806.1 + 106323 0.67 0.902111
Target:  5'- -aGCCACC-CGAgcgGGCCGCG-UGAUa- -3'
miRNA:   3'- ggCGGUGGcGCU---UCGGCGCuAUUGac -5'
5557 5' -55.8 NC_001806.1 + 26963 0.67 0.895712
Target:  5'- cCCGCCuggcgcGCCGCGGcucgugGGcCCGCGAgcgGGCc- -3'
miRNA:   3'- -GGCGG------UGGCGCU------UC-GGCGCUa--UUGac -5'
5557 5' -55.8 NC_001806.1 + 136320 0.67 0.895712
Target:  5'- uCCGCCACgCGCGuggagucgaAGGCCaGCGccAGCUc -3'
miRNA:   3'- -GGCGGUG-GCGC---------UUCGG-CGCuaUUGAc -5'
5557 5' -55.8 NC_001806.1 + 102511 0.67 0.895712
Target:  5'- cCCGaUCACCGCGGccaGGCaCGCcaGGUAGCg- -3'
miRNA:   3'- -GGC-GGUGGCGCU---UCG-GCG--CUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 106221 0.67 0.895059
Target:  5'- gCCGCCuCCGUGuuGCUGCGuucccgggccuggGUAACg- -3'
miRNA:   3'- -GGCGGuGGCGCuuCGGCGC-------------UAUUGac -5'
5557 5' -55.8 NC_001806.1 + 55772 0.67 0.889085
Target:  5'- uUCGUCACCGCuc--CCGCGGUGAUcgUGg -3'
miRNA:   3'- -GGCGGUGGCGcuucGGCGCUAUUG--AC- -5'
5557 5' -55.8 NC_001806.1 + 66846 0.67 0.889085
Target:  5'- gCGCCGCCuccUGggGCCcgggcacacgGCGGUGACg- -3'
miRNA:   3'- gGCGGUGGc--GCuuCGG----------CGCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 72820 0.67 0.889085
Target:  5'- aCCcCCGCCGCaGAggcGGCCGaagaaGAUGACg- -3'
miRNA:   3'- -GGcGGUGGCG-CU---UCGGCg----CUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 102158 0.67 0.889085
Target:  5'- aCGUUGCCGUucgcgaGGAGCCGCugGAUAACg- -3'
miRNA:   3'- gGCGGUGGCG------CUUCGGCG--CUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 143125 0.67 0.889085
Target:  5'- -gGCUGCCGgGAggGGCCGCGGaugGGCg- -3'
miRNA:   3'- ggCGGUGGCgCU--UCGGCGCUa--UUGac -5'
5557 5' -55.8 NC_001806.1 + 38802 0.67 0.889085
Target:  5'- uCCGCUuCCGCGggGaCCcggGCGGggguggauacgcUGGCUGg -3'
miRNA:   3'- -GGCGGuGGCGCuuC-GG---CGCU------------AUUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.