Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 139830 | 0.66 | 0.993582 |
Target: 5'- gCCGGGAG-CGCCA--GGACCgccugccgcgcGGAGGc -3' miRNA: 3'- aGGCUUUCgGUGGUuaUCUGG-----------UCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 73441 | 0.66 | 0.99446 |
Target: 5'- cCCGGAcGCaCACCc--AGGCCGGGGu -3' miRNA: 3'- aGGCUUuCG-GUGGuuaUCUGGUCUCc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 127696 | 0.66 | 0.99446 |
Target: 5'- gUCGAGcuGGCCGCCGuaugAGAUCgcguAGGGGu -3' miRNA: 3'- aGGCUU--UCGGUGGUua--UCUGG----UCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 41359 | 0.66 | 0.993582 |
Target: 5'- cCCGGcauccAGGCCGCCAggGGGCaucacGGGGc -3' miRNA: 3'- aGGCU-----UUCGGUGGUuaUCUGgu---CUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 136794 | 0.66 | 0.992596 |
Target: 5'- gCCGGGuGGUCGCCucgcUGGACCGGAc- -3' miRNA: 3'- aGGCUU-UCGGUGGuu--AUCUGGUCUcc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 31800 | 0.66 | 0.99446 |
Target: 5'- cCCGAAAGCauccuGCCAcuggcAUGGAgCCAGAa- -3' miRNA: 3'- aGGCUUUCGg----UGGU-----UAUCU-GGUCUcc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 71901 | 0.66 | 0.992596 |
Target: 5'- gUCCGcgGAGGCCAUCGAgggauguuUGGuCgAGGGGg -3' miRNA: 3'- -AGGC--UUUCGGUGGUU--------AUCuGgUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 144795 | 0.66 | 0.993582 |
Target: 5'- -gCGAAGGCCGCguAcggcccgGGACgAGGGGc -3' miRNA: 3'- agGCUUUCGGUGguUa------UCUGgUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 41739 | 0.66 | 0.993582 |
Target: 5'- -aCGcgGGCCACCcgcgggGGACCAGGa- -3' miRNA: 3'- agGCuuUCGGUGGuua---UCUGGUCUcc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 4624 | 0.66 | 0.993201 |
Target: 5'- gCCGAuGGCCGCCAccggccgugacgacGUcuccgcggcggcuGGGCCGGcGGg -3' miRNA: 3'- aGGCUuUCGGUGGU--------------UA-------------UCUGGUCuCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 77970 | 0.66 | 0.99446 |
Target: 5'- cCCG-GGGCCGCCGcucGGACCccAGAGc -3' miRNA: 3'- aGGCuUUCGGUGGUua-UCUGG--UCUCc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 109535 | 0.66 | 0.993582 |
Target: 5'- cUCGGGAGCCgggggaggugcGCC--UGGGCCAGGGc -3' miRNA: 3'- aGGCUUUCGG-----------UGGuuAUCUGGUCUCc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 28157 | 0.66 | 0.993489 |
Target: 5'- cCUGAGGGCCGCCcccagcgcgagguGAgGGGCCGGGc- -3' miRNA: 3'- aGGCUUUCGGUGG-------------UUaUCUGGUCUcc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 144973 | 0.66 | 0.992596 |
Target: 5'- cCCGGcccgGGGCC-CCGGcGGACCcaAGGGGc -3' miRNA: 3'- aGGCU----UUCGGuGGUUaUCUGG--UCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 43029 | 0.66 | 0.993582 |
Target: 5'- aCCGGcucGGCCcCCAGUAGAgaguuUguGAGGa -3' miRNA: 3'- aGGCUu--UCGGuGGUUAUCU-----GguCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 117699 | 0.66 | 0.99446 |
Target: 5'- cCCGAGcccgcgucGGCCcCCuccgAGGCCAGuAGGc -3' miRNA: 3'- aGGCUU--------UCGGuGGuua-UCUGGUC-UCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 147682 | 0.66 | 0.995239 |
Target: 5'- cCCGggGGCCgggGCgCGGgggcGGGCCccGGAGGc -3' miRNA: 3'- aGGCuuUCGG---UG-GUUa---UCUGG--UCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 27349 | 0.66 | 0.99446 |
Target: 5'- -gCGGGAGUUACCGcccaAUGGGCCGGGc- -3' miRNA: 3'- agGCUUUCGGUGGU----UAUCUGGUCUcc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 9190 | 0.66 | 0.993582 |
Target: 5'- cCCGggGGUCGCgGGUGuGGCgAGGGc -3' miRNA: 3'- aGGCuuUCGGUGgUUAU-CUGgUCUCc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 4864 | 0.66 | 0.992596 |
Target: 5'- gUCCGGAcGGCCuccucuACCAuggAGGCCAGcAGa -3' miRNA: 3'- -AGGCUU-UCGG------UGGUua-UCUGGUC-UCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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