miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 2697 0.72 0.895548
Target:  5'- cCCGggGgcugccGCCGCCAGccGcCCAGGGGg -3'
miRNA:   3'- aGGCuuU------CGGUGGUUauCuGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 3028 0.68 0.977366
Target:  5'- gUCCGGugcgcuGGCCGCCGcc--GCCAGcAGGg -3'
miRNA:   3'- -AGGCUu-----UCGGUGGUuaucUGGUC-UCC- -5'
5558 3' -50.8 NC_001806.1 + 3829 0.73 0.858694
Target:  5'- gCCGAAgcggccGGCCGCCAuggcGUAGcCCAGGuGGg -3'
miRNA:   3'- aGGCUU------UCGGUGGU----UAUCuGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 4624 0.66 0.993201
Target:  5'- gCCGAuGGCCGCCAccggccgugacgacGUcuccgcggcggcuGGGCCGGcGGg -3'
miRNA:   3'- aGGCUuUCGGUGGU--------------UA-------------UCUGGUCuCC- -5'
5558 3' -50.8 NC_001806.1 + 4864 0.66 0.992596
Target:  5'- gUCCGGAcGGCCuccucuACCAuggAGGCCAGcAGa -3'
miRNA:   3'- -AGGCUU-UCGG------UGGUua-UCUGGUC-UCc -5'
5558 3' -50.8 NC_001806.1 + 6630 0.67 0.985199
Target:  5'- aCCGgcGGCgACCGuugcGUGGACCgcuuccugcucgucGGGGGg -3'
miRNA:   3'- aGGCuuUCGgUGGU----UAUCUGG--------------UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 8248 0.67 0.985729
Target:  5'- gCCGAuGAGCCACCGcacccuugGGugCGGGuGGu -3'
miRNA:   3'- aGGCU-UUCGGUGGUua------UCugGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 9101 0.77 0.64663
Target:  5'- cCCG-GAGCCACCGAgcGGCCAGccAGGc -3'
miRNA:   3'- aGGCuUUCGGUGGUUauCUGGUC--UCC- -5'
5558 3' -50.8 NC_001806.1 + 9190 0.66 0.993582
Target:  5'- cCCGggGGUCGCgGGUGuGGCgAGGGc -3'
miRNA:   3'- aGGCuuUCGGUGgUUAU-CUGgUCUCc -5'
5558 3' -50.8 NC_001806.1 + 9532 0.68 0.972036
Target:  5'- cUCCGGggGGGCCAgCCAcgGGACCu--GGu -3'
miRNA:   3'- -AGGCU--UUCGGU-GGUuaUCUGGucuCC- -5'
5558 3' -50.8 NC_001806.1 + 9985 0.66 0.995239
Target:  5'- -aCGGAGGCCGCCugccacGCCAGccccGGGa -3'
miRNA:   3'- agGCUUUCGGUGGuuauc-UGGUC----UCC- -5'
5558 3' -50.8 NC_001806.1 + 10702 0.69 0.965856
Target:  5'- gCCGggGGggcguacgccaUCGCCAGcgGGACCGGAGc -3'
miRNA:   3'- aGGCuuUC-----------GGUGGUUa-UCUGGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 13102 0.68 0.974536
Target:  5'- cCCGAugcuGuCCACCGucacccccugcugGUAGGCCuGGGGg -3'
miRNA:   3'- aGGCUuu--C-GGUGGU-------------UAUCUGGuCUCC- -5'
5558 3' -50.8 NC_001806.1 + 18650 0.67 0.985729
Target:  5'- gUCCGAAccGGCgGCCuccAGAUCGGuGGc -3'
miRNA:   3'- -AGGCUU--UCGgUGGuuaUCUGGUCuCC- -5'
5558 3' -50.8 NC_001806.1 + 19358 0.7 0.946356
Target:  5'- cUCCGGGgggcccuacGGCCACCGAU--GCgGGGGGc -3'
miRNA:   3'- -AGGCUU---------UCGGUGGUUAucUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 20386 0.66 0.99446
Target:  5'- cCCGGcguCCGgCGGgcgGGACCGGGGGg -3'
miRNA:   3'- aGGCUuucGGUgGUUa--UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 20706 0.66 0.991493
Target:  5'- uUCCGuucgggguGGGcCCGCCGggGGGgCGGGGGg -3'
miRNA:   3'- -AGGCu-------UUC-GGUGGUuaUCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 22109 0.67 0.987391
Target:  5'- -gCGAcAGCCGCCc--GGGCCucuGGGGg -3'
miRNA:   3'- agGCUuUCGGUGGuuaUCUGGu--CUCC- -5'
5558 3' -50.8 NC_001806.1 + 22462 0.69 0.965856
Target:  5'- gCCGuggccauGAGCCGCCGAUAcGACCgcgcgcAGaAGGg -3'
miRNA:   3'- aGGCu------UUCGGUGGUUAU-CUGG------UC-UCC- -5'
5558 3' -50.8 NC_001806.1 + 22891 0.69 0.965856
Target:  5'- gCCGGGgcccGGcCCGCCAGccccccgcGGCCGGAGGg -3'
miRNA:   3'- aGGCUU----UC-GGUGGUUau------CUGGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.