miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 147682 0.66 0.995239
Target:  5'- cCCGggGGCCgggGCgCGGgggcGGGCCccGGAGGc -3'
miRNA:   3'- aGGCuuUCGG---UG-GUUa---UCUGG--UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 64942 0.72 0.895548
Target:  5'- gCUGAGGGaCCACCGgcGUcggcgcccGGGCCGGGGGu -3'
miRNA:   3'- aGGCUUUC-GGUGGU--UA--------UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 2697 0.72 0.895548
Target:  5'- cCCGggGgcugccGCCGCCAGccGcCCAGGGGg -3'
miRNA:   3'- aGGCuuU------CGGUGGUUauCuGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 88360 0.71 0.914761
Target:  5'- cCCGAAGGCCAUCG--GGGCCGccGGc -3'
miRNA:   3'- aGGCUUUCGGUGGUuaUCUGGUcuCC- -5'
5558 3' -50.8 NC_001806.1 + 129694 0.71 0.914761
Target:  5'- cUCCGGAcGCCucuCCGGaGGcCCGGGGGg -3'
miRNA:   3'- -AGGCUUuCGGu--GGUUaUCuGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 31883 0.71 0.924642
Target:  5'- cCCGGAcugaccuggccucuGGCCGCCAcaaaGGGCgGGGGGg -3'
miRNA:   3'- aGGCUU--------------UCGGUGGUua--UCUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 76530 0.7 0.929576
Target:  5'- gCCG-AAGCCACCGAgcgggucacggcgGGGCUgcgGGAGGu -3'
miRNA:   3'- aGGCuUUCGGUGGUUa------------UCUGG---UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 130492 0.7 0.941724
Target:  5'- gCCGGcccAGGCCGCCG--AGA-CGGAGGa -3'
miRNA:   3'- aGGCU---UUCGGUGGUuaUCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 150683 0.7 0.941724
Target:  5'- gCUGgcGGCCGCCGAUGG-CCAgucccgcccccGAGGc -3'
miRNA:   3'- aGGCuuUCGGUGGUUAUCuGGU-----------CUCC- -5'
5558 3' -50.8 NC_001806.1 + 65856 0.72 0.881509
Target:  5'- aCCGAGAGCCAaaaagAGUAGGCgAGAGc -3'
miRNA:   3'- aGGCUUUCGGUgg---UUAUCUGgUCUCc -5'
5558 3' -50.8 NC_001806.1 + 3829 0.73 0.858694
Target:  5'- gCCGAAgcggccGGCCGCCAuggcGUAGcCCAGGuGGg -3'
miRNA:   3'- aGGCUU------UCGGUGGU----UAUCuGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 84226 0.73 0.839021
Target:  5'- cUCUGAuGGCCACCGugcugaaacacGGCCGGGGGc -3'
miRNA:   3'- -AGGCUuUCGGUGGUuau--------CUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 49573 0.78 0.59387
Target:  5'- cCCGGAAGCCGUC---GGGCCGGAGGa -3'
miRNA:   3'- aGGCUUUCGGUGGuuaUCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 9101 0.77 0.64663
Target:  5'- cCCG-GAGCCACCGAgcGGCCAGccAGGc -3'
miRNA:   3'- aGGCuUUCGGUGGUUauCUGGUC--UCC- -5'
5558 3' -50.8 NC_001806.1 + 147278 0.76 0.667708
Target:  5'- -gCGGAGGCCGCCGA-GGACguCAGGGGg -3'
miRNA:   3'- agGCUUUCGGUGGUUaUCUG--GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 75434 0.74 0.788836
Target:  5'- gCCG--GGCCGCCAAccaACCGGAGGg -3'
miRNA:   3'- aGGCuuUCGGUGGUUaucUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 147823 0.74 0.798191
Target:  5'- gCgGggGGCCugUGGggagAGGCCGGGGGg -3'
miRNA:   3'- aGgCuuUCGGugGUUa---UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 33983 0.74 0.807386
Target:  5'- gCCGggGGUCGCCGGggcaGGGgCGGGGGc -3'
miRNA:   3'- aGGCuuUCGGUGGUUa---UCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 83721 0.74 0.816411
Target:  5'- cCCGGGAGCCGCCAA-GGugCAGu-- -3'
miRNA:   3'- aGGCUUUCGGUGGUUaUCugGUCucc -5'
5558 3' -50.8 NC_001806.1 + 81603 0.73 0.833919
Target:  5'- -gCGGGacGGCCAUCG--GGACCGGAGGu -3'
miRNA:   3'- agGCUU--UCGGUGGUuaUCUGGUCUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.