miRNA display CGI


Results 41 - 58 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 5' -62.6 NC_001806.1 + 123759 0.74 0.215859
Target:  5'- -gCCUCCgGGCGcCCCAGCGGC-CCCUc -3'
miRNA:   3'- gaGGAGG-CUGC-GGGUCGUCGaGGGGu -5'
5558 5' -62.6 NC_001806.1 + 69256 0.78 0.123129
Target:  5'- cCUCCgCCGGCGCCCAGCAGCggCUgCu -3'
miRNA:   3'- -GAGGaGGCUGCGGGUCGUCGa-GGgGu -5'
5558 5' -62.6 NC_001806.1 + 70144 0.71 0.318362
Target:  5'- cCUCCUcgaaCCGGcCGCCCggGGCGGCcucggCCCCAc -3'
miRNA:   3'- -GAGGA----GGCU-GCGGG--UCGUCGa----GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 21273 0.71 0.325411
Target:  5'- -aCCUCgaCGACGCCCGGCgggacgggagGGC-CCCCGc -3'
miRNA:   3'- gaGGAG--GCUGCGGGUCG----------UCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 4112 0.71 0.332576
Target:  5'- cCUCCUCCGccucggGCGCCCcccagaggcccgGGCGGCugUCgCCCAg -3'
miRNA:   3'- -GAGGAGGC------UGCGGG------------UCGUCG--AG-GGGU- -5'
5558 5' -62.6 NC_001806.1 + 86378 0.68 0.480325
Target:  5'- aCUCCUCCGcgggGCGCUCggcuaacgcGGCGGCcgCUCCGg -3'
miRNA:   3'- -GAGGAGGC----UGCGGG---------UCGUCGa-GGGGU- -5'
5558 5' -62.6 NC_001806.1 + 22339 0.68 0.462291
Target:  5'- -aUCUCgGGCGCCgcgcgcaaCAGCAGCUCCUUc -3'
miRNA:   3'- gaGGAGgCUGCGG--------GUCGUCGAGGGGu -5'
5558 5' -62.6 NC_001806.1 + 60732 0.69 0.44462
Target:  5'- aUCCa-CGACGCCCcagAGUcccuggacuGGCUCCCCGa -3'
miRNA:   3'- gAGGagGCUGCGGG---UCG---------UCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 77787 0.69 0.44462
Target:  5'- -cCCUCagCGACGCCCAGgccgccaacuuuCAGCUCUUCGg -3'
miRNA:   3'- gaGGAG--GCUGCGGGUC------------GUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 38052 0.69 0.44462
Target:  5'- -cCCUgCGACGCCCA-CGGCgUCCgCCGc -3'
miRNA:   3'- gaGGAgGCUGCGGGUcGUCG-AGG-GGU- -5'
5558 5' -62.6 NC_001806.1 + 148852 0.69 0.44462
Target:  5'- -cCCUgCGGC-CCCAGCAGC-CCCg- -3'
miRNA:   3'- gaGGAgGCUGcGGGUCGUCGaGGGgu -5'
5558 5' -62.6 NC_001806.1 + 3664 0.69 0.418841
Target:  5'- aUCUgcgCCGGCGCCgG--GGCUCCCCGc -3'
miRNA:   3'- gAGGa--GGCUGCGGgUcgUCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 146642 0.69 0.410452
Target:  5'- gUCCcgggUCGACGCCCc-CuGCUCCCCGg -3'
miRNA:   3'- gAGGa---GGCUGCGGGucGuCGAGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 109179 0.69 0.410452
Target:  5'- gCUCCUCCaGCGCCCGgucuGCGGCauaaaacaCCCAc -3'
miRNA:   3'- -GAGGAGGcUGCGGGU----CGUCGag------GGGU- -5'
5558 5' -62.6 NC_001806.1 + 106698 0.69 0.402168
Target:  5'- gCUCUUCCcGgGCCCccgGGCGGC-CCCCGg -3'
miRNA:   3'- -GAGGAGGcUgCGGG---UCGUCGaGGGGU- -5'
5558 5' -62.6 NC_001806.1 + 130135 0.7 0.385923
Target:  5'- uUCCUgCGGCcagugGCCCGcGCAGUUCuCCCAg -3'
miRNA:   3'- gAGGAgGCUG-----CGGGU-CGUCGAG-GGGU- -5'
5558 5' -62.6 NC_001806.1 + 52026 0.7 0.354758
Target:  5'- uUCCUCC--CGCUCGGCGGCagCCCGg -3'
miRNA:   3'- gAGGAGGcuGCGGGUCGUCGagGGGU- -5'
5558 5' -62.6 NC_001806.1 + 134183 1.07 0.000881
Target:  5'- cCUCCUCCGACGCCCAGCAGCUCCCCAu -3'
miRNA:   3'- -GAGGAGGCUGCGGGUCGUCGAGGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.