miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 5' -56.5 NC_001806.1 + 134019 1.08 0.00266
Target:  5'- aGCCACCCACCCACCAAGACGGAGUAAg -3'
miRNA:   3'- -CGGUGGGUGGGUGGUUCUGCCUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 130488 0.78 0.251928
Target:  5'- cGCUGCCgGCCCaggccGCCGAGACGGAGg-- -3'
miRNA:   3'- -CGGUGGgUGGG-----UGGUUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 22070 0.76 0.348908
Target:  5'- gGCC-CCCGCCC-CCGGGGCGG-GUGc -3'
miRNA:   3'- -CGGuGGGUGGGuGGUUCUGCCuCAUu -5'
5559 5' -56.5 NC_001806.1 + 4160 0.74 0.442001
Target:  5'- gGCCGCCguacagCACCCGCCccgGGGGCGGGGg-- -3'
miRNA:   3'- -CGGUGG------GUGGGUGG---UUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 143570 0.74 0.442001
Target:  5'- cGCCGCCCACCCACCcaccuCGGGa--- -3'
miRNA:   3'- -CGGUGGGUGGGUGGuucu-GCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 150699 0.74 0.460388
Target:  5'- gGCCAguCCCGCCC-CCGAGGCGGcccgcccuGUGAg -3'
miRNA:   3'- -CGGU--GGGUGGGuGGUUCUGCCu-------CAUU- -5'
5559 5' -56.5 NC_001806.1 + 30279 0.73 0.469733
Target:  5'- cGCC-CCgGCCC-CCGGGGCGGAGc-- -3'
miRNA:   3'- -CGGuGGgUGGGuGGUUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 29803 0.72 0.527674
Target:  5'- cGCCGCCgCGCCCcCCGugacGGGCGGGGc-- -3'
miRNA:   3'- -CGGUGG-GUGGGuGGU----UCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 20167 0.72 0.527674
Target:  5'- cGCCGCCCggGCCCGCCcccgGGGccggcGCGGAGUc- -3'
miRNA:   3'- -CGGUGGG--UGGGUGG----UUC-----UGCCUCAuu -5'
5559 5' -56.5 NC_001806.1 + 32230 0.72 0.567739
Target:  5'- cGCgCACCCGCgCgGCCAGGugGGccGGUAc -3'
miRNA:   3'- -CG-GUGGGUG-GgUGGUUCugCC--UCAUu -5'
5559 5' -56.5 NC_001806.1 + 31125 0.72 0.567739
Target:  5'- aGCCGCCgCACCCugcuccCCGAGAcCGcGGGUAAc -3'
miRNA:   3'- -CGGUGG-GUGGGu-----GGUUCU-GC-CUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 27229 0.72 0.567739
Target:  5'- aGCCAgCCCGCCCucaCAGGGCGGGc--- -3'
miRNA:   3'- -CGGU-GGGUGGGug-GUUCUGCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 41417 0.72 0.577885
Target:  5'- aGCCGCCUGCCCAgCGcgccguGGuCGGGGUGc -3'
miRNA:   3'- -CGGUGGGUGGGUgGU------UCuGCCUCAUu -5'
5559 5' -56.5 NC_001806.1 + 9990 0.72 0.577885
Target:  5'- gGCCGCCUGCCaCGCCAgccccgGGACGGGcuccauGUGAg -3'
miRNA:   3'- -CGGUGGGUGG-GUGGU------UCUGCCU------CAUU- -5'
5559 5' -56.5 NC_001806.1 + 12784 0.72 0.577885
Target:  5'- uGCCGCCCACCgCGCCGgcgaucAGGCccauguuguucGGGGUGg -3'
miRNA:   3'- -CGGUGGGUGG-GUGGU------UCUG-----------CCUCAUu -5'
5559 5' -56.5 NC_001806.1 + 21165 0.72 0.577885
Target:  5'- cGCCGCCCACCCcgaGCCcAGaccgcgacgaGCGGGGg-- -3'
miRNA:   3'- -CGGUGGGUGGG---UGGuUC----------UGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 45493 0.71 0.588069
Target:  5'- cGCCugaACCCGCCCugUguggggugagGGGugGGGGUGGa -3'
miRNA:   3'- -CGG---UGGGUGGGugG----------UUCugCCUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 37935 0.71 0.588069
Target:  5'- gGCCGuccgUCCACCCcgccCCGGGGCGGGGUc- -3'
miRNA:   3'- -CGGU----GGGUGGGu---GGUUCUGCCUCAuu -5'
5559 5' -56.5 NC_001806.1 + 22114 0.71 0.598286
Target:  5'- aGCCGCCCggGCCUcuggggggcGcCCGAGGCGGAGg-- -3'
miRNA:   3'- -CGGUGGG--UGGG---------U-GGUUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 29555 0.71 0.598286
Target:  5'- uGUCGCCCACCCACC----CGGAGc-- -3'
miRNA:   3'- -CGGUGGGUGGGUGGuucuGCCUCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.