miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 5' -56.5 NC_001806.1 + 1546 0.7 0.659849
Target:  5'- cGCgGCCCGCgCCACCGGGcCGGGc--- -3'
miRNA:   3'- -CGgUGGGUG-GGUGGUUCuGCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 2712 0.66 0.863752
Target:  5'- cGCCAgCCGCCCAggGGGuCGGGGc-- -3'
miRNA:   3'- -CGGUgGGUGGGUggUUCuGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 4160 0.74 0.442001
Target:  5'- gGCCGCCguacagCACCCGCCccgGGGGCGGGGg-- -3'
miRNA:   3'- -CGGUGG------GUGGGUGG---UUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 4962 0.67 0.813829
Target:  5'- gGCCcuCCCGuCCCGCCGGgcgucgucgagucGugGGGGUGGu -3'
miRNA:   3'- -CGGu-GGGU-GGGUGGUU-------------CugCCUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 5638 0.69 0.700548
Target:  5'- cCCGCCCAUCCgcGCCAucugccauGGGCGGGGc-- -3'
miRNA:   3'- cGGUGGGUGGG--UGGU--------UCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 5919 0.67 0.805897
Target:  5'- uGCCGCCCcCCCauugGCCGgcGGGCGGGa--- -3'
miRNA:   3'- -CGGUGGGuGGG----UGGU--UCUGCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 8255 0.67 0.848172
Target:  5'- aGCCACCgCACCCuugggugCGGGugguACGGGGUGGu -3'
miRNA:   3'- -CGGUGG-GUGGGug-----GUUC----UGCCUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 9990 0.72 0.577885
Target:  5'- gGCCGCCUGCCaCGCCAgccccgGGACGGGcuccauGUGAg -3'
miRNA:   3'- -CGGUGGGUGG-GUGGU------UCUGCCU------CAUU- -5'
5559 5' -56.5 NC_001806.1 + 12620 0.69 0.750045
Target:  5'- cCCcCCgCACCCAUUAAGGgGGGGUAu -3'
miRNA:   3'- cGGuGG-GUGGGUGGUUCUgCCUCAUu -5'
5559 5' -56.5 NC_001806.1 + 12784 0.72 0.577885
Target:  5'- uGCCGCCCACCgCGCCGgcgaucAGGCccauguuguucGGGGUGg -3'
miRNA:   3'- -CGGUGGGUGG-GUGGU------UCUG-----------CCUCAUu -5'
5559 5' -56.5 NC_001806.1 + 18247 0.66 0.892346
Target:  5'- uCCGCCCuuCCCGCCAuuaAGACGcuGGGa-- -3'
miRNA:   3'- cGGUGGGu-GGGUGGU---UCUGC--CUCauu -5'
5559 5' -56.5 NC_001806.1 + 19849 0.67 0.848172
Target:  5'- uCCGCCCACCCAaggugcuuacCCGugcaaaaaAGGCGGAccgGUGGg -3'
miRNA:   3'- cGGUGGGUGGGU----------GGU--------UCUGCCU---CAUU- -5'
5559 5' -56.5 NC_001806.1 + 20167 0.72 0.527674
Target:  5'- cGCCGCCCggGCCCGCCcccgGGGccggcGCGGAGUc- -3'
miRNA:   3'- -CGGUGGG--UGGGUGG----UUC-----UGCCUCAuu -5'
5559 5' -56.5 NC_001806.1 + 20319 0.7 0.63933
Target:  5'- cCCGCCCGCCgGCCAAuGGgGGGGc-- -3'
miRNA:   3'- cGGUGGGUGGgUGGUU-CUgCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 21165 0.72 0.577885
Target:  5'- cGCCGCCCACCCcgaGCCcAGaccgcgacgaGCGGGGg-- -3'
miRNA:   3'- -CGGUGGGUGGG---UGGuUC----------UGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 21429 0.66 0.877775
Target:  5'- cGCCGCCCcggACCCccgccuuucgaGCCGAcgacgauGACGGGGa-- -3'
miRNA:   3'- -CGGUGGG---UGGG-----------UGGUU-------CUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 21579 0.68 0.78782
Target:  5'- uGUCGCCgCGCCCGCCGgcccAGccgccGCGGAGa-- -3'
miRNA:   3'- -CGGUGG-GUGGGUGGU----UC-----UGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 22070 0.76 0.348908
Target:  5'- gGCC-CCCGCCC-CCGGGGCGG-GUGc -3'
miRNA:   3'- -CGGuGGGUGGGuGGUUCUGCCuCAUu -5'
5559 5' -56.5 NC_001806.1 + 22114 0.71 0.598286
Target:  5'- aGCCGCCCggGCCUcuggggggcGcCCGAGGCGGAGg-- -3'
miRNA:   3'- -CGGUGGG--UGGG---------U-GGUUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 22702 0.68 0.796934
Target:  5'- uCCGCCgCGCCCGCCucccccGCGGGGg-- -3'
miRNA:   3'- cGGUGG-GUGGGUGGuuc---UGCCUCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.