miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5560 3' -61 NC_001806.1 + 2667 0.66 0.702202
Target:  5'- gCGGCcGCgGGCGCCgCcgUGUGgCUGGg -3'
miRNA:   3'- gGCCGaCG-CCGUGG-GugACACgGACC- -5'
5560 3' -61 NC_001806.1 + 3436 0.67 0.652432
Target:  5'- gCGGCagGCGGCcaggcacucgacgGCCaCGCggccgGCCUGGg -3'
miRNA:   3'- gGCCGa-CGCCG-------------UGG-GUGaca--CGGACC- -5'
5560 3' -61 NC_001806.1 + 22792 0.66 0.682796
Target:  5'- gCCGGCcGCGugGCCguCgaGUGCCUGGc -3'
miRNA:   3'- -GGCCGaCGCcgUGGguGa-CACGGACC- -5'
5560 3' -61 NC_001806.1 + 22862 0.67 0.633736
Target:  5'- aCGGCgaccugGCGGCcguCCCgggGCUG-GCCgGGg -3'
miRNA:   3'- gGCCGa-----CGCCGu--GGG---UGACaCGGaCC- -5'
5560 3' -61 NC_001806.1 + 23571 0.66 0.702202
Target:  5'- cCCaGCcacacgGCGGCGCCCGCggccgccGcCCUGGa -3'
miRNA:   3'- -GGcCGa-----CGCCGUGGGUGaca----C-GGACC- -5'
5560 3' -61 NC_001806.1 + 24018 0.69 0.517372
Target:  5'- aCCGGCUGUGcGgGCCggaCACggccGCCUGGg -3'
miRNA:   3'- -GGCCGACGC-CgUGG---GUGaca-CGGACC- -5'
5560 3' -61 NC_001806.1 + 24304 0.68 0.574889
Target:  5'- gCCGGCggcGCGGgACCUgcgccgcacgguGCUG-GCCUcGGg -3'
miRNA:   3'- -GGCCGa--CGCCgUGGG------------UGACaCGGA-CC- -5'
5560 3' -61 NC_001806.1 + 26928 0.69 0.526815
Target:  5'- uCCGGgUGCGcCACCUg--GUGUCUGGg -3'
miRNA:   3'- -GGCCgACGCcGUGGGugaCACGGACC- -5'
5560 3' -61 NC_001806.1 + 28136 0.67 0.633736
Target:  5'- cCCGGa-GCGaGUACCCGCcG-GCCUGa -3'
miRNA:   3'- -GGCCgaCGC-CGUGGGUGaCaCGGACc -5'
5560 3' -61 NC_001806.1 + 33355 0.67 0.663235
Target:  5'- cCCGGCUGCaggGGgGCCCGgaGaGCCgcGGc -3'
miRNA:   3'- -GGCCGACG---CCgUGGGUgaCaCGGa-CC- -5'
5560 3' -61 NC_001806.1 + 33773 0.76 0.210808
Target:  5'- gCGGCUGCGGCGgCCGCcGUGUUcGGu -3'
miRNA:   3'- gGCCGACGCCGUgGGUGaCACGGaCC- -5'
5560 3' -61 NC_001806.1 + 42231 0.66 0.692523
Target:  5'- cCCGGCcgccGCGGC-CCCGCgg-GCguaCUGGc -3'
miRNA:   3'- -GGCCGa---CGCCGuGGGUGacaCG---GACC- -5'
5560 3' -61 NC_001806.1 + 57003 0.68 0.584639
Target:  5'- gCCGcauagGCGGCGCCCAgUGccagGCaCUGGg -3'
miRNA:   3'- -GGCcga--CGCCGUGGGUgACa---CG-GACC- -5'
5560 3' -61 NC_001806.1 + 59974 0.75 0.231638
Target:  5'- gCCGGC-GCGGCACCUcuCUG-GCCUcGGg -3'
miRNA:   3'- -GGCCGaCGCCGUGGGu-GACaCGGA-CC- -5'
5560 3' -61 NC_001806.1 + 63174 0.66 0.702202
Target:  5'- -aGGUUGUcGUugCCGCggGUGCaCUGGg -3'
miRNA:   3'- ggCCGACGcCGugGGUGa-CACG-GACC- -5'
5560 3' -61 NC_001806.1 + 63258 0.66 0.682796
Target:  5'- aCGGCgucGCGGagcCGCCCAaaGUcaaacgucuGCCUGGa -3'
miRNA:   3'- gGCCGa--CGCC---GUGGGUgaCA---------CGGACC- -5'
5560 3' -61 NC_001806.1 + 64953 0.67 0.64358
Target:  5'- aCCGGC-GuCGGCGCCCGg---GCCgGGg -3'
miRNA:   3'- -GGCCGaC-GCCGUGGGUgacaCGGaCC- -5'
5560 3' -61 NC_001806.1 + 67211 0.7 0.453409
Target:  5'- gCCGGCcugGCGGgGCgCGCUGguggGCCaGGu -3'
miRNA:   3'- -GGCCGa--CGCCgUGgGUGACa---CGGaCC- -5'
5560 3' -61 NC_001806.1 + 74501 0.68 0.604227
Target:  5'- gCCGaGCUGCGGCgcuucgacGCCCuagaUGcgGcCCUGGg -3'
miRNA:   3'- -GGC-CGACGCCG--------UGGGug--ACa-C-GGACC- -5'
5560 3' -61 NC_001806.1 + 77190 0.74 0.297907
Target:  5'- cCCGGCUGCGGgACgagguggugCCAaggGUGgCCUGGg -3'
miRNA:   3'- -GGCCGACGCCgUG---------GGUga-CAC-GGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.