Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5560 | 3' | -61 | NC_001806.1 | + | 149954 | 0.67 | 0.623892 |
Target: 5'- cCUGGCUGCuGCGuCUCGCUccgaGUGCCgaGGu -3' miRNA: 3'- -GGCCGACGcCGU-GGGUGA----CACGGa-CC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 108651 | 0.67 | 0.623892 |
Target: 5'- gUGGCUGCGgacauGCGCCCGCg--GCCa-- -3' miRNA: 3'- gGCCGACGC-----CGUGGGUGacaCGGacc -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 132739 | 0.68 | 0.608155 |
Target: 5'- cCCGGCguggccucgGCGGCagccggaugccuccuGCCCGCgGUGCg-GGa -3' miRNA: 3'- -GGCCGa--------CGCCG---------------UGGGUGaCACGgaCC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 74501 | 0.68 | 0.604227 |
Target: 5'- gCCGaGCUGCGGCgcuucgacGCCCuagaUGcgGcCCUGGg -3' miRNA: 3'- -GGC-CGACGCCG--------UGGGug--ACa-C-GGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 57003 | 0.68 | 0.584639 |
Target: 5'- gCCGcauagGCGGCGCCCAgUGccagGCaCUGGg -3' miRNA: 3'- -GGCcga--CGCCGUGGGUgACa---CG-GACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 119217 | 0.68 | 0.574889 |
Target: 5'- -aGGCUGCGGC-CCaC-CUGUccauggGUCUGGg -3' miRNA: 3'- ggCCGACGCCGuGG-GuGACA------CGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 24304 | 0.68 | 0.574889 |
Target: 5'- gCCGGCggcGCGGgACCUgcgccgcacgguGCUG-GCCUcGGg -3' miRNA: 3'- -GGCCGa--CGCCgUGGG------------UGACaCGGA-CC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 134913 | 0.68 | 0.565177 |
Target: 5'- aCCaGGCUGCGGUcCCCGgcgaUG-GCCUGc -3' miRNA: 3'- -GG-CCGACGCCGuGGGUg---ACaCGGACc -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 26928 | 0.69 | 0.526815 |
Target: 5'- uCCGGgUGCGcCACCUg--GUGUCUGGg -3' miRNA: 3'- -GGCCgACGCcGUGGGugaCACGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 24018 | 0.69 | 0.517372 |
Target: 5'- aCCGGCUGUGcGgGCCggaCACggccGCCUGGg -3' miRNA: 3'- -GGCCGACGC-CgUGG---GUGaca-CGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 78909 | 0.69 | 0.517372 |
Target: 5'- uCCGcGCUcaucgccgaGCGGCcccucgcccgggGCCCGCcGUGUCUGGu -3' miRNA: 3'- -GGC-CGA---------CGCCG------------UGGGUGaCACGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 67211 | 0.7 | 0.453409 |
Target: 5'- gCCGGCcugGCGGgGCgCGCUGguggGCCaGGu -3' miRNA: 3'- -GGCCGa--CGCCgUGgGUGACa---CGGaCC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 135776 | 0.73 | 0.332576 |
Target: 5'- gCGaaGCUGCGGCGCCCGCccccCCUGGu -3' miRNA: 3'- gGC--CGACGCCGUGGGUGacacGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 140672 | 0.73 | 0.30461 |
Target: 5'- -aGGCUuuuguugcugcGCGGCGCCCGC-GUGCCgcgcUGGa -3' miRNA: 3'- ggCCGA-----------CGCCGUGGGUGaCACGG----ACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 77190 | 0.74 | 0.297907 |
Target: 5'- cCCGGCUGCGGgACgagguggugCCAaggGUGgCCUGGg -3' miRNA: 3'- -GGCCGACGCCgUG---------GGUga-CAC-GGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 59974 | 0.75 | 0.231638 |
Target: 5'- gCCGGC-GCGGCACCUcuCUG-GCCUcGGg -3' miRNA: 3'- -GGCCGaCGCCGUGGGu-GACaCGGA-CC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 33773 | 0.76 | 0.210808 |
Target: 5'- gCGGCUGCGGCGgCCGCcGUGUUcGGu -3' miRNA: 3'- gGCCGACGCCGUgGGUGaCACGGaCC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 146691 | 0.77 | 0.191611 |
Target: 5'- -aGGCUGCggaaguccaGGCGCCCACUaggGUGcCCUGGu -3' miRNA: 3'- ggCCGACG---------CCGUGGGUGA---CAC-GGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 103151 | 0.83 | 0.072167 |
Target: 5'- -gGGCaGCGGCAgCCGCUGUGCgCUGGg -3' miRNA: 3'- ggCCGaCGCCGUgGGUGACACG-GACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 133283 | 1.1 | 0.000905 |
Target: 5'- uCCGGCUGCGGCACCCACUGUGCCUGGc -3' miRNA: 3'- -GGCCGACGCCGUGGGUGACACGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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